Results 81 - 100 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 152210 | 0.67 | 0.532028 |
Target: 5'- cCUCUcaccguGCCGGGGgUCuGCcGCGGCggCCg -3' miRNA: 3'- -GAGG------CGGCCCCgGGuCGuUGCCGa-GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 2380 | 0.67 | 0.532028 |
Target: 5'- -cCCG-CGGGGCgCAGUAggccuccaggGCGGCggCCg -3' miRNA: 3'- gaGGCgGCCCCGgGUCGU----------UGCCGa-GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 23565 | 0.67 | 0.532028 |
Target: 5'- -cCCGCgaGGGcCCCGGgGGCGGCgccCCg -3' miRNA: 3'- gaGGCGg-CCCcGGGUCgUUGCCGa--GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 91573 | 0.67 | 0.532028 |
Target: 5'- gUCCGCgGGGGCgCC-GCGGuuucuuuuuauCGGC-CCg -3' miRNA: 3'- gAGGCGgCCCCG-GGuCGUU-----------GCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 115836 | 0.67 | 0.532028 |
Target: 5'- --aCGcCCGGGGCCUggAGCu-CGGCguuggCCg -3' miRNA: 3'- gagGC-GGCCCCGGG--UCGuuGCCGa----GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 26489 | 0.68 | 0.486031 |
Target: 5'- gUCgGCCGcGGGCCgcgCGGgGACGGUgcuggCCg -3' miRNA: 3'- gAGgCGGC-CCCGG---GUCgUUGCCGa----GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 1480 | 0.68 | 0.486031 |
Target: 5'- --gCGCCGGGcgccauggcgucGCCCgcgcccgaGGCGGCGGC-CCg -3' miRNA: 3'- gagGCGGCCC------------CGGG--------UCGUUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 3896 | 0.68 | 0.486031 |
Target: 5'- ---gGCgGGGGgCCGGCcccgggccACGGCUCCc -3' miRNA: 3'- gaggCGgCCCCgGGUCGu-------UGCCGAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 2092 | 0.68 | 0.486031 |
Target: 5'- aCUCCGgggGGGGCCCgcccccGGCG-CGGC-CCg -3' miRNA: 3'- -GAGGCgg-CCCCGGG------UCGUuGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 152257 | 0.68 | 0.48513 |
Target: 5'- gUCCGcCCGGGagcucguGCCgGGCcGgGGUUCCa -3' miRNA: 3'- gAGGC-GGCCC-------CGGgUCGuUgCCGAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 96295 | 0.68 | 0.48513 |
Target: 5'- aUCgGCCuGGGgaagcucGCCCAGCuaaaacucAACGcGCUCCa -3' miRNA: 3'- gAGgCGG-CCC-------CGGGUCG--------UUGC-CGAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 35529 | 0.68 | 0.486031 |
Target: 5'- uCUCCGCCgcggccggcgcGGGGCguugCCGGCc-CGGC-CCg -3' miRNA: 3'- -GAGGCGG-----------CCCCG----GGUCGuuGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 43018 | 0.68 | 0.486031 |
Target: 5'- -gCCGCCcggggggagcgcGGGGCCCcgGGCGcaaauGCGGCgcgugagCCg -3' miRNA: 3'- gaGGCGG------------CCCCGGG--UCGU-----UGCCGa------GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 52013 | 0.68 | 0.486031 |
Target: 5'- gUUCGCUGGGGuCCCuGCuguACuGGC-CCg -3' miRNA: 3'- gAGGCGGCCCC-GGGuCGu--UG-CCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 70558 | 0.68 | 0.486031 |
Target: 5'- -gCCGCCGGGcugcGCaCCA-CGGCGGC-CCu -3' miRNA: 3'- gaGGCGGCCC----CG-GGUcGUUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 72221 | 0.68 | 0.486031 |
Target: 5'- -aUCGCCaggGGGGCCgucgagCAGCuGCGGC-CCg -3' miRNA: 3'- gaGGCGG---CCCCGG------GUCGuUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 85298 | 0.68 | 0.486031 |
Target: 5'- ---gGCCGGGGUCCGcCcGCGGC-CCg -3' miRNA: 3'- gaggCGGCCCCGGGUcGuUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 15373 | 0.68 | 0.486031 |
Target: 5'- aUCgGCCGuGGGCgCGGCGGaGGCgCCc -3' miRNA: 3'- gAGgCGGC-CCCGgGUCGUUgCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 73891 | 0.68 | 0.486031 |
Target: 5'- uUUCGacgUGGGGCCCcGCGACGuGCugUCCg -3' miRNA: 3'- gAGGCg--GCCCCGGGuCGUUGC-CG--AGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 71847 | 0.68 | 0.477055 |
Target: 5'- -cCCGUCGGGcGCCUAGCcacgcccccuCGGUUCa -3' miRNA: 3'- gaGGCGGCCC-CGGGUCGuu--------GCCGAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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