miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 71245 1.1 0.000526
Target:  5'- cCUCCGCCGGGGCCCAGCAACGGCUCCu -3'
miRNA:   3'- -GAGGCGGCCCCGGGUCGUUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 25278 0.82 0.057202
Target:  5'- -gCCGCCGGGGCCCAGCcacacgcCGGCgCCc -3'
miRNA:   3'- gaGGCGGCCCCGGGUCGuu-----GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 4042 0.82 0.055757
Target:  5'- -aCCGCCGcgcGGGCCCGGCGGCG-CUCCa -3'
miRNA:   3'- gaGGCGGC---CCCGGGUCGUUGCcGAGG- -5'
5228 3' -63.6 NC_001798.1 + 150036 0.82 0.061761
Target:  5'- gUCCGaguCCGGGGCCCGGCG-CGGCgCCg -3'
miRNA:   3'- gAGGC---GGCCCCGGGUCGUuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 27932 0.8 0.08375
Target:  5'- -gCCGCCGGGGuCCCGGCGcCGGCcgcgCCc -3'
miRNA:   3'- gaGGCGGCCCC-GGGUCGUuGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 105185 0.79 0.09032
Target:  5'- uCUCCGCggcggCGGGGCCCgcggugGGCGACGGCgcugCCc -3'
miRNA:   3'- -GAGGCG-----GCCCCGGG------UCGUUGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 33245 0.78 0.11031
Target:  5'- ---aGCCGGGGCCCGGCcucguucUGGCUCCc -3'
miRNA:   3'- gaggCGGCCCCGGGUCGuu-----GCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 149167 0.77 0.131131
Target:  5'- cCUCgGCCGGuGGUCCGGUggggGGCGGCUUCc -3'
miRNA:   3'- -GAGgCGGCC-CCGGGUCG----UUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 3992 0.77 0.124838
Target:  5'- -aCCGCCGGGgccGCCCGGCcgugaAGCGGC-CCg -3'
miRNA:   3'- gaGGCGGCCC---CGGGUCG-----UUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 153932 0.77 0.134387
Target:  5'- gUCCGCCuGGGGCaCCAGCAGCcaGCgCCg -3'
miRNA:   3'- gAGGCGG-CCCCG-GGUCGUUGc-CGaGG- -5'
5228 3' -63.6 NC_001798.1 + 25662 0.76 0.159331
Target:  5'- -cCUGCUGGcGGCCCugGGCAAcCGGCUCUg -3'
miRNA:   3'- gaGGCGGCC-CCGGG--UCGUU-GCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 23662 0.76 0.159331
Target:  5'- -gCCGCC-GGGCCCGcGCGGCGGUggCCg -3'
miRNA:   3'- gaGGCGGcCCCGGGU-CGUUGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 24182 0.76 0.141122
Target:  5'- uUCgGCUGGGGCCUGGCGcacgugGCGGCcgCCg -3'
miRNA:   3'- gAGgCGGCCCCGGGUCGU------UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 34851 0.76 0.14602
Target:  5'- -aCCGCCGGGcgggggacgccuuccGCCCGGCGccggGCGGCUaCCc -3'
miRNA:   3'- gaGGCGGCCC---------------CGGGUCGU----UGCCGA-GG- -5'
5228 3' -63.6 NC_001798.1 + 111583 0.75 0.179634
Target:  5'- gCUCCcugaGCgGgGGGCCCGGCGggGCGGcCUCCu -3'
miRNA:   3'- -GAGG----CGgC-CCCGGGUCGU--UGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 91261 0.75 0.188379
Target:  5'- uUCUGCCGGcGGCaaGGCGGCGGUgCCg -3'
miRNA:   3'- gAGGCGGCC-CCGggUCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 24890 0.75 0.175398
Target:  5'- -gUCGCCGGGGCCCugGGCc-CGGCgcugCCg -3'
miRNA:   3'- gaGGCGGCCCCGGG--UCGuuGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 154071 0.74 0.202198
Target:  5'- --gCGCCGGGGCgCGGC-ACGGCUg- -3'
miRNA:   3'- gagGCGGCCCCGgGUCGuUGCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 94995 0.74 0.192891
Target:  5'- -gCCGCCuGGGCCCcGCAggGCGGCgcgggCCu -3'
miRNA:   3'- gaGGCGGcCCCGGGuCGU--UGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 62278 0.74 0.197032
Target:  5'- -cCCGCCGGgcGGCCCGGCGGgagcgcgccaacuCGcGCUCCc -3'
miRNA:   3'- gaGGCGGCC--CCGGGUCGUU-------------GC-CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.