miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 58112 0.72 0.266502
Target:  5'- -gCCGCCcaGGGCCCGGCGucUGGgUCCu -3'
miRNA:   3'- gaGGCGGc-CCCGGGUCGUu-GCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 147482 0.72 0.266502
Target:  5'- gUCCGCCGGGGgaCCCA-----GGCUCCg -3'
miRNA:   3'- gAGGCGGCCCC--GGGUcguugCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 108773 0.72 0.254735
Target:  5'- -gCCGCCaGGGCCU-GCuACGGaCUCCg -3'
miRNA:   3'- gaGGCGGcCCCGGGuCGuUGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 36140 0.71 0.33195
Target:  5'- -cCCGCCgguGGGGCgCGGCGGCGGUc-- -3'
miRNA:   3'- gaGGCGG---CCCCGgGUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 3010 0.71 0.324903
Target:  5'- --gCGCgGGGGCgCGGCGGgccgGGCUCCg -3'
miRNA:   3'- gagGCGgCCCCGgGUCGUUg---CCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 154112 0.71 0.297835
Target:  5'- --gCGCCGGGGacCCCGGCGGCgGGgaCCc -3'
miRNA:   3'- gagGCGGCCCC--GGGUCGUUG-CCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 151607 0.71 0.33195
Target:  5'- gCUCgGCCGGGGgCCGGgcCGGgGGCguggCCg -3'
miRNA:   3'- -GAGgCGGCCCCgGGUC--GUUgCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 34997 0.71 0.304434
Target:  5'- cCUCCgGCCGGGGCgCAccuCGGCGGCcaagCCc -3'
miRNA:   3'- -GAGG-CGGCCCCGgGUc--GUUGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 109733 0.71 0.311145
Target:  5'- -cCCGCCGGGGCCUccuCAuaaccACGGC-CCu -3'
miRNA:   3'- gaGGCGGCCCCGGGuc-GU-----UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 75990 0.71 0.33195
Target:  5'- -cCCGCCGccccGGGCgCCGGCGGCagGGCcCCg -3'
miRNA:   3'- gaGGCGGC----CCCG-GGUCGUUG--CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 137915 0.71 0.304434
Target:  5'- cCUCCGCCGGgcGGCCCGcGCcuccccCGGCcgCCc -3'
miRNA:   3'- -GAGGCGGCC--CCGGGU-CGuu----GCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 53922 0.7 0.346378
Target:  5'- -aCCGC--GGGCCCAGCGGCaccacgGGCUCg -3'
miRNA:   3'- gaGGCGgcCCCGGGUCGUUG------CCGAGg -5'
5228 3' -63.6 NC_001798.1 + 35417 0.7 0.339108
Target:  5'- -cCCGCgGGGGCCUaaugcggcgggaGGCGugGGCcgCUg -3'
miRNA:   3'- gaGGCGgCCCCGGG------------UCGUugCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 85992 0.7 0.346378
Target:  5'- -gCCGCCGGGGCgCUGGCGcaggGgGGUgagCCg -3'
miRNA:   3'- gaGGCGGCCCCG-GGUCGU----UgCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 27737 0.7 0.353759
Target:  5'- -gCCGCCGccccuuaagaGGGCCC-GCAacACGGC-CCg -3'
miRNA:   3'- gaGGCGGC----------CCCGGGuCGU--UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 98370 0.7 0.353759
Target:  5'- gUCCGCUGGuGGCCaucgucgagagCGGCcccGACGGCUgCa -3'
miRNA:   3'- gAGGCGGCC-CCGG-----------GUCG---UUGCCGAgG- -5'
5228 3' -63.6 NC_001798.1 + 2801 0.7 0.351533
Target:  5'- gCUCCGCgGcagcgccgggcccaGGGcCCCGGCGACcaGGCUCa -3'
miRNA:   3'- -GAGGCGgC--------------CCC-GGGUCGUUG--CCGAGg -5'
5228 3' -63.6 NC_001798.1 + 153292 0.7 0.353016
Target:  5'- gUCCGCCGucuucguGGGCCCGGgCucgGGCUCg -3'
miRNA:   3'- gAGGCGGC-------CCCGGGUC-GuugCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 24709 0.7 0.353759
Target:  5'- -cCCGCgccCGGGGCCC-GCGggcGCGGCcgCCc -3'
miRNA:   3'- gaGGCG---GCCCCGGGuCGU---UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 74423 0.7 0.353759
Target:  5'- -aCCGCCGcGGCCCuGCAccucuACGGggCCa -3'
miRNA:   3'- gaGGCGGCcCCGGGuCGU-----UGCCgaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.