miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 27737 0.7 0.353759
Target:  5'- -gCCGCCGccccuuaagaGGGCCC-GCAacACGGC-CCg -3'
miRNA:   3'- gaGGCGGC----------CCCGGGuCGU--UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 85992 0.7 0.346378
Target:  5'- -gCCGCCGGGGCgCUGGCGcaggGgGGUgagCCg -3'
miRNA:   3'- gaGGCGGCCCCG-GGUCGU----UgCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 35417 0.7 0.339108
Target:  5'- -cCCGCgGGGGCCUaaugcggcgggaGGCGugGGCcgCUg -3'
miRNA:   3'- gaGGCGgCCCCGGG------------UCGUugCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 85346 0.7 0.368851
Target:  5'- uCUUgGacaCGGGGCCCuucGCcGCGGCgUCCg -3'
miRNA:   3'- -GAGgCg--GCCCCGGGu--CGuUGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 147242 0.7 0.368851
Target:  5'- -gCC-CCGGGGCCCcgggccgcgccGGCGGCGuuUCCg -3'
miRNA:   3'- gaGGcGGCCCCGGG-----------UCGUUGCcgAGG- -5'
5228 3' -63.6 NC_001798.1 + 4748 0.7 0.368086
Target:  5'- --aCGCCGGGGCCgccucguCGGCAuCGGCaUCg -3'
miRNA:   3'- gagGCGGCCCCGG-------GUCGUuGCCG-AGg -5'
5228 3' -63.6 NC_001798.1 + 61864 0.7 0.36125
Target:  5'- -gCCGCC--GGCCCAGCccGGCGGCcCCc -3'
miRNA:   3'- gaGGCGGccCCGGGUCG--UUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 122831 0.7 0.36125
Target:  5'- -gCgGUCGGGGgCggCGGCGGCGGCUCg -3'
miRNA:   3'- gaGgCGGCCCCgG--GUCGUUGCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 98370 0.7 0.353759
Target:  5'- gUCCGCUGGuGGCCaucgucgagagCGGCcccGACGGCUgCa -3'
miRNA:   3'- gAGGCGGCC-CCGG-----------GUCG---UUGCCGAgG- -5'
5228 3' -63.6 NC_001798.1 + 24709 0.7 0.353759
Target:  5'- -cCCGCgccCGGGGCCC-GCGggcGCGGCcgCCc -3'
miRNA:   3'- gaGGCG---GCCCCGGGuCGU---UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 27569 0.7 0.346378
Target:  5'- -cCCGCgGGGGagCGGC--CGGCUCCg -3'
miRNA:   3'- gaGGCGgCCCCggGUCGuuGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 43493 0.7 0.360496
Target:  5'- -gCCGCCGGGGCauaCGuGCGcgcgcgcagguagGCGGCggCCg -3'
miRNA:   3'- gaGGCGGCCCCGg--GU-CGU-------------UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 53064 0.7 0.36125
Target:  5'- -aCCGgCGGGGCCCccgaccgAACGGuCUCCg -3'
miRNA:   3'- gaGGCgGCCCCGGGucg----UUGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 40126 0.69 0.384378
Target:  5'- -gUCGCCGGGGCUgGGaUGGCGGgugucCUCCg -3'
miRNA:   3'- gaGGCGGCCCCGGgUC-GUUGCC-----GAGG- -5'
5228 3' -63.6 NC_001798.1 + 1337 0.69 0.384378
Target:  5'- -cCCGCCGcGGCCC-GCG-CaGCUCCg -3'
miRNA:   3'- gaGGCGGCcCCGGGuCGUuGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 147180 0.69 0.436879
Target:  5'- --gCGCCGGGcggaaggcgucccccGCCCGGCGGucCGGC-CCg -3'
miRNA:   3'- gagGCGGCCC---------------CGGGUCGUU--GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 69404 0.69 0.433477
Target:  5'- aCUCCGCgGGGucgaucCCCAGCAGCcacaucguacuGGCcgUCCu -3'
miRNA:   3'- -GAGGCGgCCCc-----GGGUCGUUG-----------CCG--AGG- -5'
5228 3' -63.6 NC_001798.1 + 76925 0.69 0.433477
Target:  5'- -gCCGuCCGGGGCCCccccccggaAGUcACGGCggcgCUg -3'
miRNA:   3'- gaGGC-GGCCCCGGG---------UCGuUGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 46604 0.69 0.432629
Target:  5'- -cCCGuUCGGGGCUacgaccaCGGCcagGACGGUUCCg -3'
miRNA:   3'- gaGGC-GGCCCCGG-------GUCG---UUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 127937 0.69 0.425041
Target:  5'- --aCGgCGGGGCCCcgGGCGAaaaGGC-CCg -3'
miRNA:   3'- gagGCgGCCCCGGG--UCGUUg--CCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.