Results 81 - 100 of 221 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 76925 | 0.69 | 0.433477 |
Target: 5'- -gCCGuCCGGGGCCCccccccggaAGUcACGGCggcgCUg -3' miRNA: 3'- gaGGC-GGCCCCGGG---------UCGuUGCCGa---GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 40126 | 0.69 | 0.384378 |
Target: 5'- -gUCGCCGGGGCUgGGaUGGCGGgugucCUCCg -3' miRNA: 3'- gaGGCGGCCCCGGgUC-GUUGCC-----GAGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 63382 | 0.69 | 0.408467 |
Target: 5'- gUCCGUCGGGGCCUGGgAuCGGaugaacCCg -3' miRNA: 3'- gAGGCGGCCCCGGGUCgUuGCCga----GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 153014 | 0.69 | 0.416704 |
Target: 5'- -gUCGCCGgggcggaguccGGGCCCGcGCGGCGGCg-- -3' miRNA: 3'- gaGGCGGC-----------CCCGGGU-CGUUGCCGagg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 71547 | 0.69 | 0.399525 |
Target: 5'- uUCCGgCGGauccagGGCgCCAGCGagcacacgcacggGCGGCUCUg -3' miRNA: 3'- gAGGCgGCC------CCG-GGUCGU-------------UGCCGAGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 101484 | 0.69 | 0.391506 |
Target: 5'- uUCCGUCgcgugugGGGGCCauCGGUu-CGGCUCCu -3' miRNA: 3'- gAGGCGG-------CCCCGG--GUCGuuGCCGAGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 4922 | 0.69 | 0.400333 |
Target: 5'- uCUCCGCCGcGGCCCGGaGACG--UCCc -3' miRNA: 3'- -GAGGCGGCcCCGGGUCgUUGCcgAGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 81916 | 0.69 | 0.400333 |
Target: 5'- uUCCGCCc-GGCCCcGCcuCGGCUCg -3' miRNA: 3'- gAGGCGGccCCGGGuCGuuGCCGAGg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 4415 | 0.69 | 0.425041 |
Target: 5'- --gCGCCgGGGGUCgCGGCGACaGGCUggCCa -3' miRNA: 3'- gagGCGG-CCCCGG-GUCGUUG-CCGA--GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 91121 | 0.69 | 0.425041 |
Target: 5'- gCUCCGCgGGGGCguccucguCCAGCGaacGCGGggCg -3' miRNA: 3'- -GAGGCGgCCCCG--------GGUCGU---UGCCgaGg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 36401 | 0.69 | 0.425041 |
Target: 5'- --gCGCCGGGGCCCcccugccgGGCGggGCGGUg-- -3' miRNA: 3'- gagGCGGCCCCGGG--------UCGU--UGCCGagg -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 127937 | 0.69 | 0.425041 |
Target: 5'- --aCGgCGGGGCCCcgGGCGAaaaGGC-CCg -3' miRNA: 3'- gagGCgGCCCCGGG--UCGUUg--CCGaGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 69404 | 0.69 | 0.433477 |
Target: 5'- aCUCCGCgGGGucgaucCCCAGCAGCcacaucguacuGGCcgUCCu -3' miRNA: 3'- -GAGGCGgCCCc-----GGGUCGUUG-----------CCG--AGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 147180 | 0.69 | 0.436879 |
Target: 5'- --gCGCCGGGcggaaggcgucccccGCCCGGCGGucCGGC-CCg -3' miRNA: 3'- gagGCGGCCC---------------CGGGUCGUU--GCCGaGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 5422 | 0.69 | 0.384378 |
Target: 5'- gCUCCGCCcgcgcGGcaucucauuagcGCCCGGCGcggGCGGCUuCCg -3' miRNA: 3'- -GAGGCGGc----CC------------CGGGUCGU---UGCCGA-GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 7872 | 0.69 | 0.384378 |
Target: 5'- -gCCGCUGuGGCCCuGGCGgACGGCcgCCa -3' miRNA: 3'- gaGGCGGCcCCGGG-UCGU-UGCCGa-GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 80242 | 0.69 | 0.391506 |
Target: 5'- -cCCGacCCGGGGCCUccuguucGGCAcGCGGCUggCCg -3' miRNA: 3'- gaGGC--GGCCCCGGG-------UCGU-UGCCGA--GG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 2092 | 0.68 | 0.486031 |
Target: 5'- aCUCCGgggGGGGCCCgcccccGGCG-CGGC-CCg -3' miRNA: 3'- -GAGGCgg-CCCCGGG------UCGUuGCCGaGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 152257 | 0.68 | 0.48513 |
Target: 5'- gUCCGcCCGGGagcucguGCCgGGCcGgGGUUCCa -3' miRNA: 3'- gAGGC-GGCCC-------CGGgUCGuUgCCGAGG- -5' |
|||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 96295 | 0.68 | 0.48513 |
Target: 5'- aUCgGCCuGGGgaagcucGCCCAGCuaaaacucAACGcGCUCCa -3' miRNA: 3'- gAGgCGG-CCC-------CGGGUCG--------UUGC-CGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home