miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 27737 0.7 0.353759
Target:  5'- -gCCGCCGccccuuaagaGGGCCC-GCAacACGGC-CCg -3'
miRNA:   3'- gaGGCGGC----------CCCGGGuCGU--UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 98370 0.7 0.353759
Target:  5'- gUCCGCUGGuGGCCaucgucgagagCGGCcccGACGGCUgCa -3'
miRNA:   3'- gAGGCGGCC-CCGG-----------GUCG---UUGCCGAgG- -5'
5228 3' -63.6 NC_001798.1 + 43493 0.7 0.360496
Target:  5'- -gCCGCCGGGGCauaCGuGCGcgcgcgcagguagGCGGCggCCg -3'
miRNA:   3'- gaGGCGGCCCCGg--GU-CGU-------------UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 53064 0.7 0.36125
Target:  5'- -aCCGgCGGGGCCCccgaccgAACGGuCUCCg -3'
miRNA:   3'- gaGGCgGCCCCGGGucg----UUGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 122831 0.7 0.36125
Target:  5'- -gCgGUCGGGGgCggCGGCGGCGGCUCg -3'
miRNA:   3'- gaGgCGGCCCCgG--GUCGUUGCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 61864 0.7 0.36125
Target:  5'- -gCCGCC--GGCCCAGCccGGCGGCcCCc -3'
miRNA:   3'- gaGGCGGccCCGGGUCG--UUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 4748 0.7 0.368086
Target:  5'- --aCGCCGGGGCCgccucguCGGCAuCGGCaUCg -3'
miRNA:   3'- gagGCGGCCCCGG-------GUCGUuGCCG-AGg -5'
5228 3' -63.6 NC_001798.1 + 147242 0.7 0.368851
Target:  5'- -gCC-CCGGGGCCCcgggccgcgccGGCGGCGuuUCCg -3'
miRNA:   3'- gaGGcGGCCCCGGG-----------UCGUUGCcgAGG- -5'
5228 3' -63.6 NC_001798.1 + 85346 0.7 0.368851
Target:  5'- uCUUgGacaCGGGGCCCuucGCcGCGGCgUCCg -3'
miRNA:   3'- -GAGgCg--GCCCCGGGu--CGuUGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 132103 0.7 0.375785
Target:  5'- uCUCCcgcGCCuGGGGCCCGagguccuGCAGgCGGC-CCu -3'
miRNA:   3'- -GAGG---CGG-CCCCGGGU-------CGUU-GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 52534 0.7 0.376561
Target:  5'- -gCCGUgcuggcgaCGGGGCUCAuccuGCAGCGGCUgCu -3'
miRNA:   3'- gaGGCG--------GCCCCGGGU----CGUUGCCGAgG- -5'
5228 3' -63.6 NC_001798.1 + 5735 0.7 0.376561
Target:  5'- -cCUGcCCGGGGCCC-GCGucauccCGcGCUCCg -3'
miRNA:   3'- gaGGC-GGCCCCGGGuCGUu-----GC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 66815 0.7 0.376561
Target:  5'- gUCCGUCGcGGaGCCCGGCc-CGGUgCCg -3'
miRNA:   3'- gAGGCGGC-CC-CGGGUCGuuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 88051 0.69 0.383592
Target:  5'- -gCCGCUGGGGgggcgggcucgucCCCuggGGCGGCGGCgUCUa -3'
miRNA:   3'- gaGGCGGCCCC-------------GGG---UCGUUGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 1337 0.69 0.384378
Target:  5'- -cCCGCCGcGGCCC-GCG-CaGCUCCg -3'
miRNA:   3'- gaGGCGGCcCCGGGuCGUuGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 5422 0.69 0.384378
Target:  5'- gCUCCGCCcgcgcGGcaucucauuagcGCCCGGCGcggGCGGCUuCCg -3'
miRNA:   3'- -GAGGCGGc----CC------------CGGGUCGU---UGCCGA-GG- -5'
5228 3' -63.6 NC_001798.1 + 7872 0.69 0.384378
Target:  5'- -gCCGCUGuGGCCCuGGCGgACGGCcgCCa -3'
miRNA:   3'- gaGGCGGCcCCGGG-UCGU-UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 40126 0.69 0.384378
Target:  5'- -gUCGCCGGGGCUgGGaUGGCGGgugucCUCCg -3'
miRNA:   3'- gaGGCGGCCCCGGgUC-GUUGCC-----GAGG- -5'
5228 3' -63.6 NC_001798.1 + 101484 0.69 0.391506
Target:  5'- uUCCGUCgcgugugGGGGCCauCGGUu-CGGCUCCu -3'
miRNA:   3'- gAGGCGG-------CCCCGG--GUCGuuGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 80242 0.69 0.391506
Target:  5'- -cCCGacCCGGGGCCUccuguucGGCAcGCGGCUggCCg -3'
miRNA:   3'- gaGGC--GGCCCCGGG-------UCGU-UGCCGA--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.