miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 101832 0.69 0.392303
Target:  5'- gCUCgCGgCGGGGggaggcguggguCCCGGCGGCGGCg-- -3'
miRNA:   3'- -GAG-GCgGCCCC------------GGGUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 71547 0.69 0.399525
Target:  5'- uUCCGgCGGauccagGGCgCCAGCGagcacacgcacggGCGGCUCUg -3'
miRNA:   3'- gAGGCgGCC------CCG-GGUCGU-------------UGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 4922 0.69 0.400333
Target:  5'- uCUCCGCCGcGGCCCGGaGACG--UCCc -3'
miRNA:   3'- -GAGGCGGCcCCGGGUCgUUGCcgAGG- -5'
5228 3' -63.6 NC_001798.1 + 81916 0.69 0.400333
Target:  5'- uUCCGCCc-GGCCCcGCcuCGGCUCg -3'
miRNA:   3'- gAGGCGGccCCGGGuCGuuGCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 75456 0.69 0.407649
Target:  5'- ---gGCCGGGguggccgGCCCGGCcGCGGC-CCu -3'
miRNA:   3'- gaggCGGCCC-------CGGGUCGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 63382 0.69 0.408467
Target:  5'- gUCCGUCGGGGCCUGGgAuCGGaugaacCCg -3'
miRNA:   3'- gAGGCGGCCCCGGGUCgUuGCCga----GG- -5'
5228 3' -63.6 NC_001798.1 + 32372 0.69 0.408467
Target:  5'- -cCCGagcCCGGGGCCC-GCGAccCGGCgCCc -3'
miRNA:   3'- gaGGC---GGCCCCGGGuCGUU--GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 153014 0.69 0.416704
Target:  5'- -gUCGCCGgggcggaguccGGGCCCGcGCGGCGGCg-- -3'
miRNA:   3'- gaGGCGGC-----------CCCGGGU-CGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 127937 0.69 0.425041
Target:  5'- --aCGgCGGGGCCCcgGGCGAaaaGGC-CCg -3'
miRNA:   3'- gagGCgGCCCCGGG--UCGUUg--CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 28811 0.69 0.425041
Target:  5'- cCUCCGCCGccgcGGGCCCGgGCcgucgGGCGG-UCUa -3'
miRNA:   3'- -GAGGCGGC----CCCGGGU-CG-----UUGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 91121 0.69 0.425041
Target:  5'- gCUCCGCgGGGGCguccucguCCAGCGaacGCGGggCg -3'
miRNA:   3'- -GAGGCGgCCCCG--------GGUCGU---UGCCgaGg -5'
5228 3' -63.6 NC_001798.1 + 4415 0.69 0.425041
Target:  5'- --gCGCCgGGGGUCgCGGCGACaGGCUggCCa -3'
miRNA:   3'- gagGCGG-CCCCGG-GUCGUUG-CCGA--GG- -5'
5228 3' -63.6 NC_001798.1 + 36401 0.69 0.425041
Target:  5'- --gCGCCGGGGCCCcccugccgGGCGggGCGGUg-- -3'
miRNA:   3'- gagGCGGCCCCGGG--------UCGU--UGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 46604 0.69 0.432629
Target:  5'- -cCCGuUCGGGGCUacgaccaCGGCcagGACGGUUCCg -3'
miRNA:   3'- gaGGC-GGCCCCGG-------GUCG---UUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 69404 0.69 0.433477
Target:  5'- aCUCCGCgGGGucgaucCCCAGCAGCcacaucguacuGGCcgUCCu -3'
miRNA:   3'- -GAGGCGgCCCc-----GGGUCGUUG-----------CCG--AGG- -5'
5228 3' -63.6 NC_001798.1 + 76925 0.69 0.433477
Target:  5'- -gCCGuCCGGGGCCCccccccggaAGUcACGGCggcgCUg -3'
miRNA:   3'- gaGGC-GGCCCCGGG---------UCGuUGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 147180 0.69 0.436879
Target:  5'- --gCGCCGGGcggaaggcgucccccGCCCGGCGGucCGGC-CCg -3'
miRNA:   3'- gagGCGGCCC---------------CGGGUCGUU--GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 26291 0.68 0.441152
Target:  5'- --gCGCUGGGGCCUgGGCGcgccgcuGCGGC-CCg -3'
miRNA:   3'- gagGCGGCCCCGGG-UCGU-------UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 86839 0.68 0.441152
Target:  5'- gCUCCcgGCCcGGGCCCGGCcgcgacaagacccGGCGGCggUCg -3'
miRNA:   3'- -GAGG--CGGcCCCGGGUCG-------------UUGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 24392 0.68 0.450636
Target:  5'- -gCCGCCGccGCCCcguugccgucGGCGGCGGCgucgCCg -3'
miRNA:   3'- gaGGCGGCccCGGG----------UCGUUGCCGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.