miRNA display CGI


Results 21 - 40 of 221 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 2459 0.66 0.589115
Target:  5'- -gCCGCCcugcgggucGGGGCCCucGGCGggccgGCGGgUCa -3'
miRNA:   3'- gaGGCGG---------CCCCGGG--UCGU-----UGCCgAGg -5'
5228 3' -63.6 NC_001798.1 + 26087 0.66 0.589115
Target:  5'- cCUCUGCCGcGGGgCCAaCGuGCGGUaCCg -3'
miRNA:   3'- -GAGGCGGC-CCCgGGUcGU-UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 73236 0.66 0.579498
Target:  5'- uUCCGCCggcccgGGGGCCCccGGgGACcuggaGGC-CCa -3'
miRNA:   3'- gAGGCGG------CCCCGGG--UCgUUG-----CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 7631 0.66 0.579498
Target:  5'- -aCCGCgCGGaccGGCCCccggAGUccccCGGCUCCg -3'
miRNA:   3'- gaGGCG-GCC---CCGGG----UCGuu--GCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 54554 0.66 0.579498
Target:  5'- -gCCGaCCGGGGUCCcgagcccuGCGcCGGCcggCCg -3'
miRNA:   3'- gaGGC-GGCCCCGGGu-------CGUuGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 34924 0.66 0.57662
Target:  5'- -gCCuCCGGGGCCCcuuucGCGccuuucgcgaacgcGCGGCgCCg -3'
miRNA:   3'- gaGGcGGCCCCGGGu----CGU--------------UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 74822 0.66 0.573744
Target:  5'- -cCCGCCGGGGaCgCGGCcGaagaagccgagaccuGCGGgUCCu -3'
miRNA:   3'- gaGGCGGCCCC-GgGUCG-U---------------UGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 128409 0.66 0.569915
Target:  5'- gCUUCGgCGGGGCCUGaCGACcGcCUCCa -3'
miRNA:   3'- -GAGGCgGCCCCGGGUcGUUGcC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 11456 0.66 0.569915
Target:  5'- -gCCGCgGGGGCgCCuGUAuCGGCgCUg -3'
miRNA:   3'- gaGGCGgCCCCG-GGuCGUuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 83783 0.66 0.569915
Target:  5'- --gCGCCggGGGGCCCGGacGCGGggCCc -3'
miRNA:   3'- gagGCGG--CCCCGGGUCguUGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 117447 0.66 0.569915
Target:  5'- cCUCgGCCgcGGGGCCCccccgcugcuAGaCAacGCGGCcgCCg -3'
miRNA:   3'- -GAGgCGG--CCCCGGG----------UC-GU--UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 51173 0.66 0.569915
Target:  5'- --gCGuCCGaGGCCCgGGCGGCGGCgCCc -3'
miRNA:   3'- gagGC-GGCcCCGGG-UCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 66877 0.66 0.569915
Target:  5'- --gCGCCGGGGCUugggaaaggccaCGGgGGCGGggCCg -3'
miRNA:   3'- gagGCGGCCCCGG------------GUCgUUGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 115513 0.66 0.569915
Target:  5'- aUCCGUaCGGGGCgUAcGUcGCGGCcCCg -3'
miRNA:   3'- gAGGCG-GCCCCGgGU-CGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 68694 0.66 0.569915
Target:  5'- --aCGCCccccaGGGGCCCcccaGGCAcagcuCGGCgUCCa -3'
miRNA:   3'- gagGCGG-----CCCCGGG----UCGUu----GCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 11246 0.66 0.568959
Target:  5'- -aCUG-CGGGGCCgaggacugacggaCAGCAGCacgacuggaccuGGCUCCg -3'
miRNA:   3'- gaGGCgGCCCCGG-------------GUCGUUG------------CCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 79504 0.66 0.560371
Target:  5'- -gCCGCCGGGGCgaGGCGuauCuGCgcgCCg -3'
miRNA:   3'- gaGGCGGCCCCGggUCGUu--GcCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 102382 0.66 0.560371
Target:  5'- -cCCGCCuGGcGGUCggCGGCGAUGGCcCCc -3'
miRNA:   3'- gaGGCGG-CC-CCGG--GUCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 106978 0.66 0.560371
Target:  5'- aUCgGCCGGGGa--GGCGGCGGUg-- -3'
miRNA:   3'- gAGgCGGCCCCgggUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 41461 0.66 0.560371
Target:  5'- -cCCGCCGGGGgg-GGCGGuCGGCgggCCc -3'
miRNA:   3'- gaGGCGGCCCCgggUCGUU-GCCGa--GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.