miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 41461 0.66 0.560371
Target:  5'- -cCCGCCGGGGgg-GGCGGuCGGCgggCCc -3'
miRNA:   3'- gaGGCGGCCCCgggUCGUU-GCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 79504 0.66 0.560371
Target:  5'- -gCCGCCGGGGCgaGGCGuauCuGCgcgCCg -3'
miRNA:   3'- gaGGCGGCCCCGggUCGUu--GcCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 102382 0.66 0.560371
Target:  5'- -cCCGCCuGGcGGUCggCGGCGAUGGCcCCc -3'
miRNA:   3'- gaGGCGG-CC-CCGG--GUCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 106978 0.66 0.560371
Target:  5'- aUCgGCCGGGGa--GGCGGCGGUg-- -3'
miRNA:   3'- gAGgCGGCCCCgggUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 149232 0.66 0.560371
Target:  5'- aCUCC-CCGuGGCCC-GCGGgGGCgucgCCg -3'
miRNA:   3'- -GAGGcGGCcCCGGGuCGUUgCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 61461 0.66 0.550872
Target:  5'- --gCGCCGGGGCCUccgGGCcccgGAgGGCUa- -3'
miRNA:   3'- gagGCGGCCCCGGG---UCG----UUgCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 80385 0.66 0.550872
Target:  5'- gUCCgGCCcaGGCCCuGGCGGCGGUgagcgUCCu -3'
miRNA:   3'- gAGG-CGGccCCGGG-UCGUUGCCG-----AGG- -5'
5228 3' -63.6 NC_001798.1 + 104162 0.66 0.550872
Target:  5'- -cCCGCCuGGGcGUCCAgGCAcaggGCGGCcagCCc -3'
miRNA:   3'- gaGGCGG-CCC-CGGGU-CGU----UGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 146623 0.66 0.548032
Target:  5'- -cCCGCCGcauuaggcccccgcGGGCauCCGGCGGcCGGCcCCa -3'
miRNA:   3'- gaGGCGGC--------------CCCG--GGUCGUU-GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 10727 0.67 0.545196
Target:  5'- uUCCGCgGcccacaguaguuuguGGGCCCGGguGC-GUUCCg -3'
miRNA:   3'- gAGGCGgC---------------CCCGGGUCguUGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 150830 0.67 0.545196
Target:  5'- gCUCCG-CGGGGCgCCAGgGggcgccggucgggucGCGGCgggCUg -3'
miRNA:   3'- -GAGGCgGCCCCG-GGUCgU---------------UGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 2429 0.67 0.541423
Target:  5'- -gUgGCUGGGcCCCGGCGGCuGGCggcgCCa -3'
miRNA:   3'- gaGgCGGCCCcGGGUCGUUG-CCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 29033 0.67 0.541423
Target:  5'- aCUCCGCCccGGcgaccGCCCcGCGcCGGCUUCc -3'
miRNA:   3'- -GAGGCGG--CCc----CGGGuCGUuGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 79980 0.67 0.541423
Target:  5'- gUCCGCCGccGGGCCCc-CGGgGGUcCCa -3'
miRNA:   3'- gAGGCGGC--CCCGGGucGUUgCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 149443 0.67 0.541423
Target:  5'- --gUGCuCGGGGagCAggguGCGGCGGCUCCa -3'
miRNA:   3'- gagGCG-GCCCCggGU----CGUUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 21716 0.67 0.540481
Target:  5'- uCUCCGCCGcgcagccGGuguGCCCcugguGCGGCGGCgaCCg -3'
miRNA:   3'- -GAGGCGGC-------CC---CGGGu----CGUUGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 9507 0.67 0.538598
Target:  5'- gUCCGCCacgcgaauguaaguGGGGCCCGucGCcgaGGC-CCg -3'
miRNA:   3'- gAGGCGG--------------CCCCGGGU--CGuugCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 20176 0.67 0.532028
Target:  5'- -cUCGCacacGGGCUCGGCGGCGGgUUCa -3'
miRNA:   3'- gaGGCGgc--CCCGGGUCGUUGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 115836 0.67 0.532028
Target:  5'- --aCGcCCGGGGCCUggAGCu-CGGCguuggCCg -3'
miRNA:   3'- gagGC-GGCCCCGGG--UCGuuGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 91573 0.67 0.532028
Target:  5'- gUCCGCgGGGGCgCC-GCGGuuucuuuuuauCGGC-CCg -3'
miRNA:   3'- gAGGCGgCCCCG-GGuCGUU-----------GCCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.