miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 23565 0.67 0.532028
Target:  5'- -cCCGCgaGGGcCCCGGgGGCGGCgccCCg -3'
miRNA:   3'- gaGGCGg-CCCcGGGUCgUUGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 91573 0.67 0.532028
Target:  5'- gUCCGCgGGGGCgCC-GCGGuuucuuuuuauCGGC-CCg -3'
miRNA:   3'- gAGGCGgCCCCG-GGuCGUU-----------GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 115836 0.67 0.532028
Target:  5'- --aCGcCCGGGGCCUggAGCu-CGGCguuggCCg -3'
miRNA:   3'- gagGC-GGCCCCGGG--UCGuuGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 20176 0.67 0.532028
Target:  5'- -cUCGCacacGGGCUCGGCGGCGGgUUCa -3'
miRNA:   3'- gaGGCGgc--CCCGGGUCGUUGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 87717 0.67 0.532028
Target:  5'- cCUCCGCCGuaGCgCCGGCccccgcCGGC-CCg -3'
miRNA:   3'- -GAGGCGGCccCG-GGUCGuu----GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 29761 0.67 0.531092
Target:  5'- -aCC-CCGGcucauggaaccccGGCCCGGC-ACGaGCUCCc -3'
miRNA:   3'- gaGGcGGCC-------------CCGGGUCGuUGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 150563 0.67 0.522693
Target:  5'- -gCgGcCCGGGGCCCGcGgGGCGGCg-- -3'
miRNA:   3'- gaGgC-GGCCCCGGGU-CgUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 3305 0.67 0.522693
Target:  5'- -gCCGCCgacggcaacGGGGCggCGGCGGCGGCgggcuUCCc -3'
miRNA:   3'- gaGGCGG---------CCCCGg-GUCGUUGCCG-----AGG- -5'
5228 3' -63.6 NC_001798.1 + 135707 0.67 0.522693
Target:  5'- uCUCCGCgGGGccgcguacGCCCGGCGGCcgaGGUUa- -3'
miRNA:   3'- -GAGGCGgCCC--------CGGGUCGUUG---CCGAgg -5'
5228 3' -63.6 NC_001798.1 + 145026 0.67 0.522693
Target:  5'- gUCCGCgGGGGUCCGcauGCAA-GGCa-- -3'
miRNA:   3'- gAGGCGgCCCCGGGU---CGUUgCCGagg -5'
5228 3' -63.6 NC_001798.1 + 1195 0.67 0.522693
Target:  5'- -cCCGCCGcGG-CCAGCAccguccccgcGCGGC-CCg -3'
miRNA:   3'- gaGGCGGCcCCgGGUCGU----------UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 86073 0.67 0.522693
Target:  5'- -cCCGCCgucugggagucGGGGcCCCGGCuGCGcGCcgCCg -3'
miRNA:   3'- gaGGCGG-----------CCCC-GGGUCGuUGC-CGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 59256 0.67 0.513421
Target:  5'- -cCCGCaccCGGGGCCCGaCGGC-GCUCUc -3'
miRNA:   3'- gaGGCG---GCCCCGGGUcGUUGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 54704 0.67 0.513421
Target:  5'- -gCCGCCGGGGUCUAcgacGCGguGCGGa-CCu -3'
miRNA:   3'- gaGGCGGCCCCGGGU----CGU--UGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 44973 0.67 0.504218
Target:  5'- gCUCCGCCcucGGaGGCggAGCcGCGGCUgCa -3'
miRNA:   3'- -GAGGCGG---CC-CCGggUCGuUGCCGAgG- -5'
5228 3' -63.6 NC_001798.1 + 58688 0.67 0.504218
Target:  5'- -gCCGCCGucaGGGCCgCGGCGgcGCGGgggucgaUCCa -3'
miRNA:   3'- gaGGCGGC---CCCGG-GUCGU--UGCCg------AGG- -5'
5228 3' -63.6 NC_001798.1 + 105270 0.67 0.504218
Target:  5'- aUCCGCCucuucGGCCgCGGCcgccGCGGuCUCCa -3'
miRNA:   3'- gAGGCGGcc---CCGG-GUCGu---UGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 130447 0.67 0.504218
Target:  5'- -cCCGUCuGGGCCCccGGCcacuGCuGCUCCa -3'
miRNA:   3'- gaGGCGGcCCCGGG--UCGu---UGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 57435 0.67 0.503301
Target:  5'- gCUCCGaggaugucuuCgGGGGCCCGGUcuuggggGGCGGggCCg -3'
miRNA:   3'- -GAGGC----------GgCCCCGGGUCG-------UUGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 134167 0.67 0.495086
Target:  5'- -gCCGUCGcGGccGCCCGcgccGCGACGGCcCCg -3'
miRNA:   3'- gaGGCGGC-CC--CGGGU----CGUUGCCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.