miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 12202 0.67 0.495086
Target:  5'- -gCC-CUGGGGCCCcacGGCccCGGCaUCCa -3'
miRNA:   3'- gaGGcGGCCCCGGG---UCGuuGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 47071 0.67 0.495086
Target:  5'- --aUGCCGGGGCgaCAGCGcCGGUguggugUCCg -3'
miRNA:   3'- gagGCGGCCCCGg-GUCGUuGCCG------AGG- -5'
5228 3' -63.6 NC_001798.1 + 134167 0.67 0.495086
Target:  5'- -gCCGUCGcGGccGCCCGcgccGCGACGGCcCCg -3'
miRNA:   3'- gaGGCGGC-CC--CGGGU----CGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 47811 0.67 0.495086
Target:  5'- gUCCGUCGcGGGCucucacggccCCGGCcccgcGCGcGCUCCu -3'
miRNA:   3'- gAGGCGGC-CCCG----------GGUCGu----UGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 82149 0.67 0.494177
Target:  5'- uCUCC-CCGGGaCCCAGCcgaccacGCGGCcgcgguuUCCg -3'
miRNA:   3'- -GAGGcGGCCCcGGGUCGu------UGCCG-------AGG- -5'
5228 3' -63.6 NC_001798.1 + 2092 0.68 0.486031
Target:  5'- aCUCCGgggGGGGCCCgcccccGGCG-CGGC-CCg -3'
miRNA:   3'- -GAGGCgg-CCCCGGG------UCGUuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 3896 0.68 0.486031
Target:  5'- ---gGCgGGGGgCCGGCcccgggccACGGCUCCc -3'
miRNA:   3'- gaggCGgCCCCgGGUCGu-------UGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 1480 0.68 0.486031
Target:  5'- --gCGCCGGGcgccauggcgucGCCCgcgcccgaGGCGGCGGC-CCg -3'
miRNA:   3'- gagGCGGCCC------------CGGG--------UCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 26489 0.68 0.486031
Target:  5'- gUCgGCCGcGGGCCgcgCGGgGACGGUgcuggCCg -3'
miRNA:   3'- gAGgCGGC-CCCGG---GUCgUUGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 35529 0.68 0.486031
Target:  5'- uCUCCGCCgcggccggcgcGGGGCguugCCGGCc-CGGC-CCg -3'
miRNA:   3'- -GAGGCGG-----------CCCCG----GGUCGuuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 43018 0.68 0.486031
Target:  5'- -gCCGCCcggggggagcgcGGGGCCCcgGGCGcaaauGCGGCgcgugagCCg -3'
miRNA:   3'- gaGGCGG------------CCCCGGG--UCGU-----UGCCGa------GG- -5'
5228 3' -63.6 NC_001798.1 + 52013 0.68 0.486031
Target:  5'- gUUCGCUGGGGuCCCuGCuguACuGGC-CCg -3'
miRNA:   3'- gAGGCGGCCCC-GGGuCGu--UG-CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 70558 0.68 0.486031
Target:  5'- -gCCGCCGGGcugcGCaCCA-CGGCGGC-CCu -3'
miRNA:   3'- gaGGCGGCCC----CG-GGUcGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 72221 0.68 0.486031
Target:  5'- -aUCGCCaggGGGGCCgucgagCAGCuGCGGC-CCg -3'
miRNA:   3'- gaGGCGG---CCCCGG------GUCGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 85298 0.68 0.486031
Target:  5'- ---gGCCGGGGUCCGcCcGCGGC-CCg -3'
miRNA:   3'- gaggCGGCCCCGGGUcGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 15373 0.68 0.486031
Target:  5'- aUCgGCCGuGGGCgCGGCGGaGGCgCCc -3'
miRNA:   3'- gAGgCGGC-CCCGgGUCGUUgCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 73891 0.68 0.486031
Target:  5'- uUUCGacgUGGGGCCCcGCGACGuGCugUCCg -3'
miRNA:   3'- gAGGCg--GCCCCGGGuCGUUGC-CG--AGG- -5'
5228 3' -63.6 NC_001798.1 + 135787 0.68 0.486031
Target:  5'- -cCCGCCGGaggaGGCCguGUGcGCGGC-CCg -3'
miRNA:   3'- gaGGCGGCC----CCGGguCGU-UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 152257 0.68 0.48513
Target:  5'- gUCCGcCCGGGagcucguGCCgGGCcGgGGUUCCa -3'
miRNA:   3'- gAGGC-GGCCC-------CGGgUCGuUgCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 96295 0.68 0.48513
Target:  5'- aUCgGCCuGGGgaagcucGCCCAGCuaaaacucAACGcGCUCCa -3'
miRNA:   3'- gAGgCGG-CCC-------CGGGUCG--------UUGC-CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.