miRNA display CGI


Results 101 - 120 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 71847 0.68 0.477055
Target:  5'- -cCCGUCGGGcGCCUAGCcacgcccccuCGGUUCa -3'
miRNA:   3'- gaGGCGGCCC-CGGGUCGuu--------GCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 18252 0.68 0.477055
Target:  5'- uUCCGggggcCCGGGGgCCAGguACGcaucCUCCg -3'
miRNA:   3'- gAGGC-----GGCCCCgGGUCguUGCc---GAGG- -5'
5228 3' -63.6 NC_001798.1 + 75262 0.68 0.477055
Target:  5'- -gCCGCCacGGcGGUCCGGCucGCGGCgcgcgaugCCg -3'
miRNA:   3'- gaGGCGG--CC-CCGGGUCGu-UGCCGa-------GG- -5'
5228 3' -63.6 NC_001798.1 + 24510 0.68 0.476162
Target:  5'- cCUCCgcgccgGCCGGGGCCgAcgacgacgacgacGaCGACGGCgCCg -3'
miRNA:   3'- -GAGG------CGGCCCCGGgU-------------C-GUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 139329 0.68 0.471709
Target:  5'- -aUCGCCGGcGCCCGcGCGcgcugugcggccaugGCGGCgUCCg -3'
miRNA:   3'- gaGGCGGCCcCGGGU-CGU---------------UGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 2502 0.68 0.468162
Target:  5'- -gCCGCggggcgCGGcGGCCgCGGCGGCGGCgUCg -3'
miRNA:   3'- gaGGCG------GCC-CCGG-GUCGUUGCCG-AGg -5'
5228 3' -63.6 NC_001798.1 + 26331 0.68 0.468162
Target:  5'- --gCGCUGGGGCgCGacgccgugcGCGGCGGC-CCg -3'
miRNA:   3'- gagGCGGCCCCGgGU---------CGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 53200 0.68 0.468162
Target:  5'- uCUUCGCCGGGuGucugcuccccacCCCGG-AGgGGCUCCu -3'
miRNA:   3'- -GAGGCGGCCC-C------------GGGUCgUUgCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 102910 0.68 0.468162
Target:  5'- -gCCGCCGccGCUCGGCcACaaGGCUCCa -3'
miRNA:   3'- gaGGCGGCccCGGGUCGuUG--CCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 121547 0.68 0.468162
Target:  5'- gCUgCGCCuggcguGGGGCCCgugGGCGaccugugcccGCGuGCUCCu -3'
miRNA:   3'- -GAgGCGG------CCCCGGG---UCGU----------UGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 134703 0.68 0.462867
Target:  5'- -gCCGCgCGGcuacgacuacuucguGaGCCCGGCGACGGguuCUCCg -3'
miRNA:   3'- gaGGCG-GCC---------------C-CGGGUCGUUGCC---GAGG- -5'
5228 3' -63.6 NC_001798.1 + 3476 0.68 0.459354
Target:  5'- uUCUGCgCGcGGUCgUAGCGGCGGCUCa -3'
miRNA:   3'- gAGGCG-GCcCCGG-GUCGUUGCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 22351 0.68 0.459354
Target:  5'- --gCGUCGGGGCggggCCGcGCAuaauGCGGUUCCa -3'
miRNA:   3'- gagGCGGCCCCG----GGU-CGU----UGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 129354 0.68 0.459354
Target:  5'- -cCCGCC-GGGCCUGGCGG-GGCcCCc -3'
miRNA:   3'- gaGGCGGcCCCGGGUCGUUgCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 153227 0.68 0.459354
Target:  5'- -aCgGCCcGGGCCC-GCGGCGGCggaggacCCg -3'
miRNA:   3'- gaGgCGGcCCCGGGuCGUUGCCGa------GG- -5'
5228 3' -63.6 NC_001798.1 + 78241 0.68 0.459354
Target:  5'- aUCCGggccgacgugcaCCGGGcGCUCGGCGGCGuGCcCCu -3'
miRNA:   3'- gAGGC------------GGCCC-CGGGUCGUUGC-CGaGG- -5'
5228 3' -63.6 NC_001798.1 + 3825 0.68 0.450636
Target:  5'- cCUCCGCCucGGGcGCCCcccagaGGCcggGGCGGCUg- -3'
miRNA:   3'- -GAGGCGG--CCC-CGGG------UCG---UUGCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 74388 0.68 0.450636
Target:  5'- cCUCCGgcCCGGGGgCCguGGCGcCGGCggaCCu -3'
miRNA:   3'- -GAGGC--GGCCCCgGG--UCGUuGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 34793 0.68 0.450636
Target:  5'- -gCCGCCggcgcggcccGGGGCCCcggGGCcccCGcGCUCCg -3'
miRNA:   3'- gaGGCGG----------CCCCGGG---UCGuu-GC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 24392 0.68 0.450636
Target:  5'- -gCCGCCGccGCCCcguugccgucGGCGGCGGCgucgCCg -3'
miRNA:   3'- gaGGCGGCccCGGG----------UCGUUGCCGa---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.