Results 121 - 140 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 3825 | 0.68 | 0.450636 |
Target: 5'- cCUCCGCCucGGGcGCCCcccagaGGCcggGGCGGCUg- -3' miRNA: 3'- -GAGGCGG--CCC-CGGG------UCG---UUGCCGAgg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 77172 | 0.68 | 0.450636 |
Target: 5'- --aCGCCGGGaGCgCCGccgucGCGACGGCaagUCCc -3' miRNA: 3'- gagGCGGCCC-CG-GGU-----CGUUGCCG---AGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 86839 | 0.68 | 0.441152 |
Target: 5'- gCUCCcgGCCcGGGCCCGGCcgcgacaagacccGGCGGCggUCg -3' miRNA: 3'- -GAGG--CGGcCCCGGGUCG-------------UUGCCGa-GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 26291 | 0.68 | 0.441152 |
Target: 5'- --gCGCUGGGGCCUgGGCGcgccgcuGCGGC-CCg -3' miRNA: 3'- gagGCGGCCCCGGG-UCGU-------UGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 147180 | 0.69 | 0.436879 |
Target: 5'- --gCGCCGGGcggaaggcgucccccGCCCGGCGGucCGGC-CCg -3' miRNA: 3'- gagGCGGCCC---------------CGGGUCGUU--GCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 69404 | 0.69 | 0.433477 |
Target: 5'- aCUCCGCgGGGucgaucCCCAGCAGCcacaucguacuGGCcgUCCu -3' miRNA: 3'- -GAGGCGgCCCc-----GGGUCGUUG-----------CCG--AGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 76925 | 0.69 | 0.433477 |
Target: 5'- -gCCGuCCGGGGCCCccccccggaAGUcACGGCggcgCUg -3' miRNA: 3'- gaGGC-GGCCCCGGG---------UCGuUGCCGa---GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 46604 | 0.69 | 0.432629 |
Target: 5'- -cCCGuUCGGGGCUacgaccaCGGCcagGACGGUUCCg -3' miRNA: 3'- gaGGC-GGCCCCGG-------GUCG---UUGCCGAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 127937 | 0.69 | 0.425041 |
Target: 5'- --aCGgCGGGGCCCcgGGCGAaaaGGC-CCg -3' miRNA: 3'- gagGCgGCCCCGGG--UCGUUg--CCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 36401 | 0.69 | 0.425041 |
Target: 5'- --gCGCCGGGGCCCcccugccgGGCGggGCGGUg-- -3' miRNA: 3'- gagGCGGCCCCGGG--------UCGU--UGCCGagg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 28811 | 0.69 | 0.425041 |
Target: 5'- cCUCCGCCGccgcGGGCCCGgGCcgucgGGCGG-UCUa -3' miRNA: 3'- -GAGGCGGC----CCCGGGU-CG-----UUGCCgAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 91121 | 0.69 | 0.425041 |
Target: 5'- gCUCCGCgGGGGCguccucguCCAGCGaacGCGGggCg -3' miRNA: 3'- -GAGGCGgCCCCG--------GGUCGU---UGCCgaGg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 4415 | 0.69 | 0.425041 |
Target: 5'- --gCGCCgGGGGUCgCGGCGACaGGCUggCCa -3' miRNA: 3'- gagGCGG-CCCCGG-GUCGUUG-CCGA--GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 153014 | 0.69 | 0.416704 |
Target: 5'- -gUCGCCGgggcggaguccGGGCCCGcGCGGCGGCg-- -3' miRNA: 3'- gaGGCGGC-----------CCCGGGU-CGUUGCCGagg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 63382 | 0.69 | 0.408467 |
Target: 5'- gUCCGUCGGGGCCUGGgAuCGGaugaacCCg -3' miRNA: 3'- gAGGCGGCCCCGGGUCgUuGCCga----GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 32372 | 0.69 | 0.408467 |
Target: 5'- -cCCGagcCCGGGGCCC-GCGAccCGGCgCCc -3' miRNA: 3'- gaGGC---GGCCCCGGGuCGUU--GCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 75456 | 0.69 | 0.407649 |
Target: 5'- ---gGCCGGGguggccgGCCCGGCcGCGGC-CCu -3' miRNA: 3'- gaggCGGCCC-------CGGGUCGuUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 81916 | 0.69 | 0.400333 |
Target: 5'- uUCCGCCc-GGCCCcGCcuCGGCUCg -3' miRNA: 3'- gAGGCGGccCCGGGuCGuuGCCGAGg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 4922 | 0.69 | 0.400333 |
Target: 5'- uCUCCGCCGcGGCCCGGaGACG--UCCc -3' miRNA: 3'- -GAGGCGGCcCCGGGUCgUUGCcgAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 71547 | 0.69 | 0.399525 |
Target: 5'- uUCCGgCGGauccagGGCgCCAGCGagcacacgcacggGCGGCUCUg -3' miRNA: 3'- gAGGCgGCC------CCG-GGUCGU-------------UGCCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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