miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 4125 0.66 0.589115
Target:  5'- gCUCgGCCGGGGCgCC-GCcccCGGggCCc -3'
miRNA:   3'- -GAGgCGGCCCCG-GGuCGuu-GCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 4415 0.69 0.425041
Target:  5'- --gCGCCgGGGGUCgCGGCGACaGGCUggCCa -3'
miRNA:   3'- gagGCGG-CCCCGG-GUCGUUG-CCGA--GG- -5'
5228 3' -63.6 NC_001798.1 + 4748 0.7 0.368086
Target:  5'- --aCGCCGGGGCCgccucguCGGCAuCGGCaUCg -3'
miRNA:   3'- gagGCGGCCCCGG-------GUCGUuGCCG-AGg -5'
5228 3' -63.6 NC_001798.1 + 4922 0.69 0.400333
Target:  5'- uCUCCGCCGcGGCCCGGaGACG--UCCc -3'
miRNA:   3'- -GAGGCGGCcCCGGGUCgUUGCcgAGG- -5'
5228 3' -63.6 NC_001798.1 + 5422 0.69 0.384378
Target:  5'- gCUCCGCCcgcgcGGcaucucauuagcGCCCGGCGcggGCGGCUuCCg -3'
miRNA:   3'- -GAGGCGGc----CC------------CGGGUCGU---UGCCGA-GG- -5'
5228 3' -63.6 NC_001798.1 + 5735 0.7 0.376561
Target:  5'- -cCUGcCCGGGGCCC-GCGucauccCGcGCUCCg -3'
miRNA:   3'- gaGGC-GGCCCCGGGuCGUu-----GC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 5873 0.72 0.265903
Target:  5'- -cCUGcCCGGGGCCC-GCGucaucccGCGGgCUCCg -3'
miRNA:   3'- gaGGC-GGCCCCGGGuCGU-------UGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 5976 0.66 0.598761
Target:  5'- -gCCGCaccaGGGGacaCCGGCugcGCGGCggagaCCg -3'
miRNA:   3'- gaGGCGg---CCCCg--GGUCGu--UGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 7171 0.66 0.560371
Target:  5'- uUCCGaCCGacGGGCCCccGCAccgggGCGGCgaCCa -3'
miRNA:   3'- gAGGC-GGC--CCCGGGu-CGU-----UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 7631 0.66 0.579498
Target:  5'- -aCCGCgCGGaccGGCCCccggAGUccccCGGCUCCg -3'
miRNA:   3'- gaGGCG-GCC---CCGGG----UCGuu--GCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 7872 0.69 0.384378
Target:  5'- -gCCGCUGuGGCCCuGGCGgACGGCcgCCa -3'
miRNA:   3'- gaGGCGGCcCCGGG-UCGU-UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 9507 0.67 0.538598
Target:  5'- gUCCGCCacgcgaauguaaguGGGGCCCGucGCcgaGGC-CCg -3'
miRNA:   3'- gAGGCGG--------------CCCCGGGU--CGuugCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 10727 0.67 0.545196
Target:  5'- uUCCGCgGcccacaguaguuuguGGGCCCGGguGC-GUUCCg -3'
miRNA:   3'- gAGGCGgC---------------CCCGGGUCguUGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 11246 0.66 0.568959
Target:  5'- -aCUG-CGGGGCCgaggacugacggaCAGCAGCacgacuggaccuGGCUCCg -3'
miRNA:   3'- gaGGCgGCCCCGG-------------GUCGUUG------------CCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 11456 0.66 0.569915
Target:  5'- -gCCGCgGGGGCgCCuGUAuCGGCgCUg -3'
miRNA:   3'- gaGGCGgCCCCG-GGuCGUuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 12202 0.67 0.495086
Target:  5'- -gCC-CUGGGGCCCcacGGCccCGGCaUCCa -3'
miRNA:   3'- gaGGcGGCCCCGGG---UCGuuGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 12305 0.66 0.598761
Target:  5'- -aUCGCCa-GGCCCuGCAGCGaGCggCCg -3'
miRNA:   3'- gaGGCGGccCCGGGuCGUUGC-CGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 15373 0.68 0.486031
Target:  5'- aUCgGCCGuGGGCgCGGCGGaGGCgCCc -3'
miRNA:   3'- gAGgCGGC-CCCGgGUCGUUgCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 16632 0.66 0.598761
Target:  5'- --gCGCCGGGGCaggucuugccgcCCGGCGuccGCGGaaCCc -3'
miRNA:   3'- gagGCGGCCCCG------------GGUCGU---UGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 18252 0.68 0.477055
Target:  5'- uUCCGggggcCCGGGGgCCAGguACGcaucCUCCg -3'
miRNA:   3'- gAGGC-----GGCCCCgGGUCguUGCc---GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.