miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 27569 0.7 0.346378
Target:  5'- -cCCGCgGGGGagCGGC--CGGCUCCg -3'
miRNA:   3'- gaGGCGgCCCCggGUCGuuGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 27737 0.7 0.353759
Target:  5'- -gCCGCCGccccuuaagaGGGCCC-GCAacACGGC-CCg -3'
miRNA:   3'- gaGGCGGC----------CCCGGGuCGU--UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 27932 0.8 0.08375
Target:  5'- -gCCGCCGGGGuCCCGGCGcCGGCcgcgCCc -3'
miRNA:   3'- gaGGCGGCCCC-GGGUCGUuGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 28811 0.69 0.425041
Target:  5'- cCUCCGCCGccgcGGGCCCGgGCcgucgGGCGG-UCUa -3'
miRNA:   3'- -GAGGCGGC----CCCGGGU-CG-----UUGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 28948 0.72 0.284338
Target:  5'- aUCCG-CGaGGGCCCGGCGccgccccGCcGCUCCg -3'
miRNA:   3'- gAGGCgGC-CCCGGGUCGU-------UGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 29033 0.67 0.541423
Target:  5'- aCUCCGCCccGGcgaccGCCCcGCGcCGGCUUCc -3'
miRNA:   3'- -GAGGCGG--CCc----CGGGuCGUuGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 29539 0.66 0.598761
Target:  5'- -cCCGCCGGGGC---GCG-CGGCUa- -3'
miRNA:   3'- gaGGCGGCCCCGgguCGUuGCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 29761 0.67 0.531092
Target:  5'- -aCC-CCGGcucauggaaccccGGCCCGGC-ACGaGCUCCc -3'
miRNA:   3'- gaGGcGGCC-------------CCGGGUCGuUGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 32372 0.69 0.408467
Target:  5'- -cCCGagcCCGGGGCCC-GCGAccCGGCgCCc -3'
miRNA:   3'- gaGGC---GGCCCCGGGuCGUU--GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 33245 0.78 0.11031
Target:  5'- ---aGCCGGGGCCCGGCcucguucUGGCUCCc -3'
miRNA:   3'- gaggCGGCCCCGGGUCGuu-----GCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 34793 0.68 0.450636
Target:  5'- -gCCGCCggcgcggcccGGGGCCCcggGGCcccCGcGCUCCg -3'
miRNA:   3'- gaGGCGG----------CCCCGGG---UCGuu-GC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 34851 0.76 0.14602
Target:  5'- -aCCGCCGGGcgggggacgccuuccGCCCGGCGccggGCGGCUaCCc -3'
miRNA:   3'- gaGGCGGCCC---------------CGGGUCGU----UGCCGA-GG- -5'
5228 3' -63.6 NC_001798.1 + 34924 0.66 0.57662
Target:  5'- -gCCuCCGGGGCCCcuuucGCGccuuucgcgaacgcGCGGCgCCg -3'
miRNA:   3'- gaGGcGGCCCCGGGu----CGU--------------UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 34997 0.71 0.304434
Target:  5'- cCUCCgGCCGGGGCgCAccuCGGCGGCcaagCCc -3'
miRNA:   3'- -GAGG-CGGCCCCGgGUc--GUUGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 35417 0.7 0.339108
Target:  5'- -cCCGCgGGGGCCUaaugcggcgggaGGCGugGGCcgCUg -3'
miRNA:   3'- gaGGCGgCCCCGGG------------UCGUugCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 35529 0.68 0.486031
Target:  5'- uCUCCGCCgcggccggcgcGGGGCguugCCGGCc-CGGC-CCg -3'
miRNA:   3'- -GAGGCGG-----------CCCCG----GGUCGuuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 36140 0.71 0.33195
Target:  5'- -cCCGCCgguGGGGCgCGGCGGCGGUc-- -3'
miRNA:   3'- gaGGCGG---CCCCGgGUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 36401 0.69 0.425041
Target:  5'- --gCGCCGGGGCCCcccugccgGGCGggGCGGUg-- -3'
miRNA:   3'- gagGCGGCCCCGGG--------UCGU--UGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 39655 0.73 0.23789
Target:  5'- -gCCGCCGGGGCcguaucgaccCCGGCcccGGCGGCgaccucgCCg -3'
miRNA:   3'- gaGGCGGCCCCG----------GGUCG---UUGCCGa------GG- -5'
5228 3' -63.6 NC_001798.1 + 40126 0.69 0.384378
Target:  5'- -gUCGCCGGGGCUgGGaUGGCGGgugucCUCCg -3'
miRNA:   3'- gaGGCGGCCCCGGgUC-GUUGCC-----GAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.