miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 41461 0.66 0.560371
Target:  5'- -cCCGCCGGGGgg-GGCGGuCGGCgggCCc -3'
miRNA:   3'- gaGGCGGCCCCgggUCGUU-GCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 42308 0.66 0.589115
Target:  5'- -gCCGUCGGGGCCgaucuUGGCGaaauACGGCa-- -3'
miRNA:   3'- gaGGCGGCCCCGG-----GUCGU----UGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 42889 0.72 0.28497
Target:  5'- cCUCguggaGCCGGGGaaaGGgGACGGCUCCu -3'
miRNA:   3'- -GAGg----CGGCCCCgggUCgUUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 43018 0.68 0.486031
Target:  5'- -gCCGCCcggggggagcgcGGGGCCCcgGGCGcaaauGCGGCgcgugagCCg -3'
miRNA:   3'- gaGGCGG------------CCCCGGG--UCGU-----UGCCGa------GG- -5'
5228 3' -63.6 NC_001798.1 + 43493 0.7 0.360496
Target:  5'- -gCCGCCGGGGCauaCGuGCGcgcgcgcagguagGCGGCggCCg -3'
miRNA:   3'- gaGGCGGCCCCGg--GU-CGU-------------UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 44973 0.67 0.504218
Target:  5'- gCUCCGCCcucGGaGGCggAGCcGCGGCUgCa -3'
miRNA:   3'- -GAGGCGG---CC-CCGggUCGuUGCCGAgG- -5'
5228 3' -63.6 NC_001798.1 + 46604 0.69 0.432629
Target:  5'- -cCCGuUCGGGGCUacgaccaCGGCcagGACGGUUCCg -3'
miRNA:   3'- gaGGC-GGCCCCGG-------GUCG---UUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 47071 0.67 0.495086
Target:  5'- --aUGCCGGGGCgaCAGCGcCGGUguggugUCCg -3'
miRNA:   3'- gagGCGGCCCCGg-GUCGUuGCCG------AGG- -5'
5228 3' -63.6 NC_001798.1 + 47811 0.67 0.495086
Target:  5'- gUCCGUCGcGGGCucucacggccCCGGCcccgcGCGcGCUCCu -3'
miRNA:   3'- gAGGCGGC-CCCG----------GGUCGu----UGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 51173 0.66 0.569915
Target:  5'- --gCGuCCGaGGCCCgGGCGGCGGCgCCc -3'
miRNA:   3'- gagGC-GGCcCCGGG-UCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 52013 0.68 0.486031
Target:  5'- gUUCGCUGGGGuCCCuGCuguACuGGC-CCg -3'
miRNA:   3'- gAGGCGGCCCC-GGGuCGu--UG-CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 52534 0.7 0.376561
Target:  5'- -gCCGUgcuggcgaCGGGGCUCAuccuGCAGCGGCUgCu -3'
miRNA:   3'- gaGGCG--------GCCCCGGGU----CGUUGCCGAgG- -5'
5228 3' -63.6 NC_001798.1 + 53064 0.7 0.36125
Target:  5'- -aCCGgCGGGGCCCccgaccgAACGGuCUCCg -3'
miRNA:   3'- gaGGCgGCCCCGGGucg----UUGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 53102 0.7 0.339108
Target:  5'- --aCGCCGGGcGCgCGGCG-CGaGCUCCc -3'
miRNA:   3'- gagGCGGCCC-CGgGUCGUuGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 53200 0.68 0.468162
Target:  5'- uCUUCGCCGGGuGucugcuccccacCCCGG-AGgGGCUCCu -3'
miRNA:   3'- -GAGGCGGCCC-C------------GGGUCgUUgCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 53839 0.66 0.589115
Target:  5'- -gCCGCCuGGGCCCcGCcgaucgcCGGUUCg -3'
miRNA:   3'- gaGGCGGcCCCGGGuCGuu-----GCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 53922 0.7 0.346378
Target:  5'- -aCCGC--GGGCCCAGCGGCaccacgGGCUCg -3'
miRNA:   3'- gaGGCGgcCCCGGGUCGUUG------CCGAGg -5'
5228 3' -63.6 NC_001798.1 + 54554 0.66 0.579498
Target:  5'- -gCCGaCCGGGGUCCcgagcccuGCGcCGGCcggCCg -3'
miRNA:   3'- gaGGC-GGCCCCGGGu-------CGUuGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 54704 0.67 0.513421
Target:  5'- -gCCGCCGGGGUCUAcgacGCGguGCGGa-CCu -3'
miRNA:   3'- gaGGCGGCCCCGGGU----CGU--UGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 55571 0.74 0.211894
Target:  5'- -cCCGCCGGGGCUucguggguagUAGCAuaugcggaucGCGaGCUCCu -3'
miRNA:   3'- gaGGCGGCCCCGG----------GUCGU----------UGC-CGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.