miRNA display CGI


Results 101 - 120 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 57435 0.67 0.503301
Target:  5'- gCUCCGaggaugucuuCgGGGGCCCGGUcuuggggGGCGGggCCg -3'
miRNA:   3'- -GAGGC----------GgCCCCGGGUCG-------UUGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 58112 0.72 0.266502
Target:  5'- -gCCGCCcaGGGCCCGGCGucUGGgUCCu -3'
miRNA:   3'- gaGGCGGc-CCCGGGUCGUu-GCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 58688 0.67 0.504218
Target:  5'- -gCCGCCGucaGGGCCgCGGCGgcGCGGgggucgaUCCa -3'
miRNA:   3'- gaGGCGGC---CCCGG-GUCGU--UGCCg------AGG- -5'
5228 3' -63.6 NC_001798.1 + 59256 0.67 0.513421
Target:  5'- -cCCGCaccCGGGGCCCGaCGGC-GCUCUc -3'
miRNA:   3'- gaGGCG---GCCCCGGGUcGUUGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 59632 0.66 0.59297
Target:  5'- cCUCCGCCGccucGGGUCCGuaucucGCGGagagggggggcgacuCGGCUCg -3'
miRNA:   3'- -GAGGCGGC----CCCGGGU------CGUU---------------GCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 60295 0.66 0.598761
Target:  5'- -gCCGuuGGGGCCgAGCucgaacgugGugGGUUUg -3'
miRNA:   3'- gaGGCggCCCCGGgUCG---------UugCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 60897 0.66 0.60746
Target:  5'- -aCCGCCGGGaagaugaGCCaugccGCGAC-GCUCCc -3'
miRNA:   3'- gaGGCGGCCC-------CGGgu---CGUUGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 61461 0.66 0.550872
Target:  5'- --gCGCCGGGGCCUccgGGCcccgGAgGGCUa- -3'
miRNA:   3'- gagGCGGCCCCGGG---UCG----UUgCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 61864 0.7 0.36125
Target:  5'- -gCCGCC--GGCCCAGCccGGCGGCcCCc -3'
miRNA:   3'- gaGGCGGccCCGGGUCG--UUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 62278 0.74 0.197032
Target:  5'- -cCCGCCGGgcGGCCCGGCGGgagcgcgccaacuCGcGCUCCc -3'
miRNA:   3'- gaGGCGGCC--CCGGGUCGUU-------------GC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 62451 0.72 0.28497
Target:  5'- -gUCGCCGGuGGgCCGcGCGACGGCgCCc -3'
miRNA:   3'- gaGGCGGCC-CCgGGU-CGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 63382 0.69 0.408467
Target:  5'- gUCCGUCGGGGCCUGGgAuCGGaugaacCCg -3'
miRNA:   3'- gAGGCGGCCCCGGGUCgUuGCCga----GG- -5'
5228 3' -63.6 NC_001798.1 + 66758 0.73 0.227184
Target:  5'- gUCCGCCuGGGGUgCGGCGGCGuGggCCg -3'
miRNA:   3'- gAGGCGG-CCCCGgGUCGUUGC-CgaGG- -5'
5228 3' -63.6 NC_001798.1 + 66815 0.7 0.376561
Target:  5'- gUCCGUCGcGGaGCCCGGCc-CGGUgCCg -3'
miRNA:   3'- gAGGCGGC-CC-CGGGUCGuuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 66877 0.66 0.569915
Target:  5'- --gCGCCGGGGCUugggaaaggccaCGGgGGCGGggCCg -3'
miRNA:   3'- gagGCGGCCCCGG------------GUCgUUGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 68694 0.66 0.569915
Target:  5'- --aCGCCccccaGGGGCCCcccaGGCAcagcuCGGCgUCCa -3'
miRNA:   3'- gagGCGG-----CCCCGGG----UCGUu----GCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 69404 0.69 0.433477
Target:  5'- aCUCCGCgGGGucgaucCCCAGCAGCcacaucguacuGGCcgUCCu -3'
miRNA:   3'- -GAGGCGgCCCc-----GGGUCGUUG-----------CCG--AGG- -5'
5228 3' -63.6 NC_001798.1 + 70203 0.66 0.608428
Target:  5'- cCUCCGCCGGccGCCCucccccucgAGCGAgcCGGCg-- -3'
miRNA:   3'- -GAGGCGGCCc-CGGG---------UCGUU--GCCGagg -5'
5228 3' -63.6 NC_001798.1 + 70558 0.68 0.486031
Target:  5'- -gCCGCCGGGcugcGCaCCA-CGGCGGC-CCu -3'
miRNA:   3'- gaGGCGGCCC----CG-GGUcGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 71245 1.1 0.000526
Target:  5'- cCUCCGCCGGGGCCCAGCAACGGCUCCu -3'
miRNA:   3'- -GAGGCGGCCCCGGGUCGUUGCCGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.