miRNA display CGI


Results 1 - 20 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 154112 0.71 0.297835
Target:  5'- --gCGCCGGGGacCCCGGCGGCgGGgaCCc -3'
miRNA:   3'- gagGCGGCCCC--GGGUCGUUG-CCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 154071 0.74 0.202198
Target:  5'- --gCGCCGGGGCgCGGC-ACGGCUg- -3'
miRNA:   3'- gagGCGGCCCCGgGUCGuUGCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 154047 0.74 0.202198
Target:  5'- --gCGCCGGGGCgCGGC-ACGGCUg- -3'
miRNA:   3'- gagGCGGCCCCGgGUCGuUGCCGAgg -5'
5228 3' -63.6 NC_001798.1 + 153932 0.77 0.134387
Target:  5'- gUCCGCCuGGGGCaCCAGCAGCcaGCgCCg -3'
miRNA:   3'- gAGGCGG-CCCCG-GGUCGUUGc-CGaGG- -5'
5228 3' -63.6 NC_001798.1 + 153292 0.7 0.353016
Target:  5'- gUCCGCCGucuucguGGGCCCGGgCucgGGCUCg -3'
miRNA:   3'- gAGGCGGC-------CCCGGGUC-GuugCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 153227 0.68 0.459354
Target:  5'- -aCgGCCcGGGCCC-GCGGCGGCggaggacCCg -3'
miRNA:   3'- gaGgCGGcCCCGGGuCGUUGCCGa------GG- -5'
5228 3' -63.6 NC_001798.1 + 153014 0.69 0.416704
Target:  5'- -gUCGCCGgggcggaguccGGGCCCGcGCGGCGGCg-- -3'
miRNA:   3'- gaGGCGGC-----------CCCGGGU-CGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 152257 0.68 0.48513
Target:  5'- gUCCGcCCGGGagcucguGCCgGGCcGgGGUUCCa -3'
miRNA:   3'- gAGGC-GGCCC-------CGGgUCGuUgCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 152210 0.67 0.532028
Target:  5'- cCUCUcaccguGCCGGGGgUCuGCcGCGGCggCCg -3'
miRNA:   3'- -GAGG------CGGCCCCgGGuCGuUGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 151607 0.71 0.33195
Target:  5'- gCUCgGCCGGGGgCCGGgcCGGgGGCguggCCg -3'
miRNA:   3'- -GAGgCGGCCCCgGGUC--GUUgCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 150830 0.67 0.545196
Target:  5'- gCUCCG-CGGGGCgCCAGgGggcgccggucgggucGCGGCgggCUg -3'
miRNA:   3'- -GAGGCgGCCCCG-GGUCgU---------------UGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 150563 0.67 0.522693
Target:  5'- -gCgGcCCGGGGCCCGcGgGGCGGCg-- -3'
miRNA:   3'- gaGgC-GGCCCCGGGU-CgUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 150036 0.82 0.061761
Target:  5'- gUCCGaguCCGGGGCCCGGCG-CGGCgCCg -3'
miRNA:   3'- gAGGC---GGCCCCGGGUCGUuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 149443 0.67 0.541423
Target:  5'- --gUGCuCGGGGagCAggguGCGGCGGCUCCa -3'
miRNA:   3'- gagGCG-GCCCCggGU----CGUUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 149232 0.66 0.560371
Target:  5'- aCUCC-CCGuGGCCC-GCGGgGGCgucgCCg -3'
miRNA:   3'- -GAGGcGGCcCCGGGuCGUUgCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 149167 0.77 0.131131
Target:  5'- cCUCgGCCGGuGGUCCGGUggggGGCGGCUUCc -3'
miRNA:   3'- -GAGgCGGCC-CCGGGUCG----UUGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 147482 0.72 0.266502
Target:  5'- gUCCGCCGGGGgaCCCA-----GGCUCCg -3'
miRNA:   3'- gAGGCGGCCCC--GGGUcguugCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 147242 0.7 0.368851
Target:  5'- -gCC-CCGGGGCCCcgggccgcgccGGCGGCGuuUCCg -3'
miRNA:   3'- gaGGcGGCCCCGGG-----------UCGUUGCcgAGG- -5'
5228 3' -63.6 NC_001798.1 + 147180 0.69 0.436879
Target:  5'- --gCGCCGGGcggaaggcgucccccGCCCGGCGGucCGGC-CCg -3'
miRNA:   3'- gagGCGGCCC---------------CGGGUCGUU--GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 147058 0.66 0.560371
Target:  5'- -gCCGgaGGGGCCCccGCAccuCGGCggCCg -3'
miRNA:   3'- gaGGCggCCCCGGGu-CGUu--GCCGa-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.