miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 146623 0.66 0.548032
Target:  5'- -cCCGCCGcauuaggcccccgcGGGCauCCGGCGGcCGGCcCCa -3'
miRNA:   3'- gaGGCGGC--------------CCCG--GGUCGUU-GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 145026 0.67 0.522693
Target:  5'- gUCCGCgGGGGUCCGcauGCAA-GGCa-- -3'
miRNA:   3'- gAGGCGgCCCCGGGU---CGUUgCCGagg -5'
5228 3' -63.6 NC_001798.1 + 141124 0.66 0.589115
Target:  5'- -gCCGCCGGcGCaUCGGCAACcagGGCcgCCg -3'
miRNA:   3'- gaGGCGGCCcCG-GGUCGUUG---CCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 139329 0.68 0.471709
Target:  5'- -aUCGCCGGcGCCCGcGCGcgcugugcggccaugGCGGCgUCCg -3'
miRNA:   3'- gaGGCGGCCcCGGGU-CGU---------------UGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 137915 0.71 0.304434
Target:  5'- cCUCCGCCGGgcGGCCCGcGCcuccccCGGCcgCCc -3'
miRNA:   3'- -GAGGCGGCC--CCGGGU-CGuu----GCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 135787 0.68 0.486031
Target:  5'- -cCCGCCGGaggaGGCCguGUGcGCGGC-CCg -3'
miRNA:   3'- gaGGCGGCC----CCGGguCGU-UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 135707 0.67 0.522693
Target:  5'- uCUCCGCgGGGccgcguacGCCCGGCGGCcgaGGUUa- -3'
miRNA:   3'- -GAGGCGgCCC--------CGGGUCGUUG---CCGAgg -5'
5228 3' -63.6 NC_001798.1 + 135236 0.66 0.598761
Target:  5'- -gCUGCCGGaaGCCCGGgGGCgGGCgggCCu -3'
miRNA:   3'- gaGGCGGCCc-CGGGUCgUUG-CCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 134703 0.68 0.462867
Target:  5'- -gCCGCgCGGcuacgacuacuucguGaGCCCGGCGACGGguuCUCCg -3'
miRNA:   3'- gaGGCG-GCC---------------C-CGGGUCGUUGCC---GAGG- -5'
5228 3' -63.6 NC_001798.1 + 134167 0.67 0.495086
Target:  5'- -gCCGUCGcGGccGCCCGcgccGCGACGGCcCCg -3'
miRNA:   3'- gaGGCGGC-CC--CGGGU----CGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 132144 0.74 0.197497
Target:  5'- -gCCGCCGGGGgCCGGCGggcGgGGCgCCc -3'
miRNA:   3'- gaGGCGGCCCCgGGUCGU---UgCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 132103 0.7 0.375785
Target:  5'- uCUCCcgcGCCuGGGGCCCGagguccuGCAGgCGGC-CCu -3'
miRNA:   3'- -GAGG---CGG-CCCCGGGU-------CGUU-GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 131355 0.66 0.608428
Target:  5'- --aCGUCGGcGCCCGGC-GCGGcCUCg -3'
miRNA:   3'- gagGCGGCCcCGGGUCGuUGCC-GAGg -5'
5228 3' -63.6 NC_001798.1 + 130447 0.67 0.504218
Target:  5'- -cCCGUCuGGGCCCccGGCcacuGCuGCUCCa -3'
miRNA:   3'- gaGGCGGcCCCGGG--UCGu---UGcCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 129689 0.73 0.23789
Target:  5'- --gCGCCGGGGcCCCAGUAcCGGCg-- -3'
miRNA:   3'- gagGCGGCCCC-GGGUCGUuGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 129354 0.68 0.459354
Target:  5'- -cCCGCC-GGGCCUGGCGG-GGCcCCc -3'
miRNA:   3'- gaGGCGGcCCCGGGUCGUUgCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 128409 0.66 0.569915
Target:  5'- gCUUCGgCGGGGCCUGaCGACcGcCUCCa -3'
miRNA:   3'- -GAGGCgGCCCCGGGUcGUUGcC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 127937 0.69 0.425041
Target:  5'- --aCGgCGGGGCCCcgGGCGAaaaGGC-CCg -3'
miRNA:   3'- gagGCgGCCCCGGG--UCGUUg--CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 126593 0.74 0.192891
Target:  5'- aUCC-CCGGGGCCC-GCAGCuucgggGGCUCg -3'
miRNA:   3'- gAGGcGGCCCCGGGuCGUUG------CCGAGg -5'
5228 3' -63.6 NC_001798.1 + 126261 0.73 0.23789
Target:  5'- -gCCGCCGGGcGUCCGGacgcccaAGCGGCcCCu -3'
miRNA:   3'- gaGGCGGCCC-CGGGUCg------UUGCCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.