miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 124975 0.66 0.598761
Target:  5'- gCUCCGCgUGGucCCCgAGCAgcACGGCggCCa -3'
miRNA:   3'- -GAGGCG-GCCccGGG-UCGU--UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 122831 0.7 0.36125
Target:  5'- -gCgGUCGGGGgCggCGGCGGCGGCUCg -3'
miRNA:   3'- gaGgCGGCCCCgG--GUCGUUGCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 121547 0.68 0.468162
Target:  5'- gCUgCGCCuggcguGGGGCCCgugGGCGaccugugcccGCGuGCUCCu -3'
miRNA:   3'- -GAgGCGG------CCCCGGG---UCGU----------UGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 117995 0.66 0.608428
Target:  5'- -cCCGCCGGGGUgCcGCGA--GCUCg -3'
miRNA:   3'- gaGGCGGCCCCGgGuCGUUgcCGAGg -5'
5228 3' -63.6 NC_001798.1 + 117447 0.66 0.569915
Target:  5'- cCUCgGCCgcGGGGCCCccccgcugcuAGaCAacGCGGCcgCCg -3'
miRNA:   3'- -GAGgCGG--CCCCGGG----------UC-GU--UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 115836 0.67 0.532028
Target:  5'- --aCGcCCGGGGCCUggAGCu-CGGCguuggCCg -3'
miRNA:   3'- gagGC-GGCCCCGGG--UCGuuGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 115513 0.66 0.569915
Target:  5'- aUCCGUaCGGGGCgUAcGUcGCGGCcCCg -3'
miRNA:   3'- gAGGCG-GCCCCGgGU-CGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 111583 0.75 0.179634
Target:  5'- gCUCCcugaGCgGgGGGCCCGGCGggGCGGcCUCCu -3'
miRNA:   3'- -GAGG----CGgC-CCCGGGUCGU--UGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 109733 0.71 0.311145
Target:  5'- -cCCGCCGGGGCCUccuCAuaaccACGGC-CCu -3'
miRNA:   3'- gaGGCGGCCCCGGGuc-GU-----UGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 108773 0.72 0.254735
Target:  5'- -gCCGCCaGGGCCU-GCuACGGaCUCCg -3'
miRNA:   3'- gaGGCGGcCCCGGGuCGuUGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 106978 0.66 0.560371
Target:  5'- aUCgGCCGGGGa--GGCGGCGGUg-- -3'
miRNA:   3'- gAGgCGGCCCCgggUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 105270 0.67 0.504218
Target:  5'- aUCCGCCucuucGGCCgCGGCcgccGCGGuCUCCa -3'
miRNA:   3'- gAGGCGGcc---CCGG-GUCGu---UGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 105185 0.79 0.09032
Target:  5'- uCUCCGCggcggCGGGGCCCgcggugGGCGACGGCgcugCCc -3'
miRNA:   3'- -GAGGCG-----GCCCCGGG------UCGUUGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 104162 0.66 0.550872
Target:  5'- -cCCGCCuGGGcGUCCAgGCAcaggGCGGCcagCCc -3'
miRNA:   3'- gaGGCGG-CCC-CGGGU-CGU----UGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 102994 0.72 0.276846
Target:  5'- cCUCCacGCCGGGgGCCCAGguGCGcccggccagcgcgaGCUCg -3'
miRNA:   3'- -GAGG--CGGCCC-CGGGUCguUGC--------------CGAGg -5'
5228 3' -63.6 NC_001798.1 + 102910 0.68 0.468162
Target:  5'- -gCCGCCGccGCUCGGCcACaaGGCUCCa -3'
miRNA:   3'- gaGGCGGCccCGGGUCGuUG--CCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 102382 0.66 0.560371
Target:  5'- -cCCGCCuGGcGGUCggCGGCGAUGGCcCCc -3'
miRNA:   3'- gaGGCGG-CC-CCGG--GUCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 101832 0.69 0.392303
Target:  5'- gCUCgCGgCGGGGggaggcguggguCCCGGCGGCGGCg-- -3'
miRNA:   3'- -GAG-GCgGCCCC------------GGGUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 101484 0.69 0.391506
Target:  5'- uUCCGUCgcgugugGGGGCCauCGGUu-CGGCUCCu -3'
miRNA:   3'- gAGGCGG-------CCCCGG--GUCGuuGCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 98370 0.7 0.353759
Target:  5'- gUCCGCUGGuGGCCaucgucgagagCGGCcccGACGGCUgCa -3'
miRNA:   3'- gAGGCGGCC-CCGG-----------GUCG---UUGCCGAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.