miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 96295 0.68 0.48513
Target:  5'- aUCgGCCuGGGgaagcucGCCCAGCuaaaacucAACGcGCUCCa -3'
miRNA:   3'- gAGgCGG-CCC-------CGGGUCG--------UUGC-CGAGG- -5'
5228 3' -63.6 NC_001798.1 + 95030 0.72 0.260564
Target:  5'- ---gGCCGGGGCCCGcGCGcugAUGGaCUCCc -3'
miRNA:   3'- gaggCGGCCCCGGGU-CGU---UGCC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 94995 0.74 0.192891
Target:  5'- -gCCGCCuGGGCCCcGCAggGCGGCgcgggCCu -3'
miRNA:   3'- gaGGCGGcCCCGGGuCGU--UGCCGa----GG- -5'
5228 3' -63.6 NC_001798.1 + 93105 0.66 0.60746
Target:  5'- --aCGCCGGgaacaagGGCCCGGCgGGCGGgUUUg -3'
miRNA:   3'- gagGCGGCC-------CCGGGUCG-UUGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 91573 0.67 0.532028
Target:  5'- gUCCGCgGGGGCgCC-GCGGuuucuuuuuauCGGC-CCg -3'
miRNA:   3'- gAGGCGgCCCCG-GGuCGUU-----------GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 91261 0.75 0.188379
Target:  5'- uUCUGCCGGcGGCaaGGCGGCGGUgCCg -3'
miRNA:   3'- gAGGCGGCC-CCGggUCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 91121 0.69 0.425041
Target:  5'- gCUCCGCgGGGGCguccucguCCAGCGaacGCGGggCg -3'
miRNA:   3'- -GAGGCGgCCCCG--------GGUCGU---UGCCgaGg -5'
5228 3' -63.6 NC_001798.1 + 88391 0.73 0.227184
Target:  5'- cCUCUGCgGGGcGCUCGGCuaacGCGGCggCCg -3'
miRNA:   3'- -GAGGCGgCCC-CGGGUCGu---UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 88051 0.69 0.383592
Target:  5'- -gCCGCUGGGGgggcgggcucgucCCCuggGGCGGCGGCgUCUa -3'
miRNA:   3'- gaGGCGGCCCC-------------GGG---UCGUUGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 87717 0.67 0.532028
Target:  5'- cCUCCGCCGuaGCgCCGGCccccgcCGGC-CCg -3'
miRNA:   3'- -GAGGCGGCccCG-GGUCGuu----GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 86892 0.72 0.260564
Target:  5'- -gCCGCCGGGaacCCCGGCGugGaGCgCCg -3'
miRNA:   3'- gaGGCGGCCCc--GGGUCGUugC-CGaGG- -5'
5228 3' -63.6 NC_001798.1 + 86839 0.68 0.441152
Target:  5'- gCUCCcgGCCcGGGCCCGGCcgcgacaagacccGGCGGCggUCg -3'
miRNA:   3'- -GAGG--CGGcCCCGGGUCG-------------UUGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 86073 0.67 0.522693
Target:  5'- -cCCGCCgucugggagucGGGGcCCCGGCuGCGcGCcgCCg -3'
miRNA:   3'- gaGGCGG-----------CCCC-GGGUCGuUGC-CGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 85992 0.7 0.346378
Target:  5'- -gCCGCCGGGGCgCUGGCGcaggGgGGUgagCCg -3'
miRNA:   3'- gaGGCGGCCCCG-GGUCGU----UgCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 85346 0.7 0.368851
Target:  5'- uCUUgGacaCGGGGCCCuucGCcGCGGCgUCCg -3'
miRNA:   3'- -GAGgCg--GCCCCGGGu--CGuUGCCG-AGG- -5'
5228 3' -63.6 NC_001798.1 + 85298 0.68 0.486031
Target:  5'- ---gGCCGGGGUCCGcCcGCGGC-CCg -3'
miRNA:   3'- gaggCGGCCCCGGGUcGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 85260 0.72 0.291347
Target:  5'- -gCCGCgCGGGGCCgCGcGCGA-GGCUUCg -3'
miRNA:   3'- gaGGCG-GCCCCGG-GU-CGUUgCCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 83783 0.66 0.569915
Target:  5'- --gCGCCggGGGGCCCGGacGCGGggCCc -3'
miRNA:   3'- gagGCGG--CCCCGGGUCguUGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 82149 0.67 0.494177
Target:  5'- uCUCC-CCGGGaCCCAGCcgaccacGCGGCcgcgguuUCCg -3'
miRNA:   3'- -GAGGcGGCCCcGGGUCGu------UGCCG-------AGG- -5'
5228 3' -63.6 NC_001798.1 + 82063 0.73 0.221986
Target:  5'- -cCCcCCGGGGCCCcGCGGcCGGC-CCa -3'
miRNA:   3'- gaGGcGGCCCCGGGuCGUU-GCCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.