miRNA display CGI


Results 81 - 100 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 81916 0.69 0.400333
Target:  5'- uUCCGCCc-GGCCCcGCcuCGGCUCg -3'
miRNA:   3'- gAGGCGGccCCGGGuCGuuGCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 81534 0.66 0.560371
Target:  5'- -aCCGCgGcccaucGGGCCggCAGCuACGGCUCg -3'
miRNA:   3'- gaGGCGgC------CCCGG--GUCGuUGCCGAGg -5'
5228 3' -63.6 NC_001798.1 + 80385 0.66 0.550872
Target:  5'- gUCCgGCCcaGGCCCuGGCGGCGGUgagcgUCCu -3'
miRNA:   3'- gAGG-CGGccCCGGG-UCGUUGCCG-----AGG- -5'
5228 3' -63.6 NC_001798.1 + 80242 0.69 0.391506
Target:  5'- -cCCGacCCGGGGCCUccuguucGGCAcGCGGCUggCCg -3'
miRNA:   3'- gaGGC--GGCCCCGGG-------UCGU-UGCCGA--GG- -5'
5228 3' -63.6 NC_001798.1 + 79980 0.67 0.541423
Target:  5'- gUCCGCCGccGGGCCCc-CGGgGGUcCCa -3'
miRNA:   3'- gAGGCGGC--CCCGGGucGUUgCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 79952 0.67 0.532028
Target:  5'- ---gGCUGGGcGUCCggAGCGGCGGCgCCg -3'
miRNA:   3'- gaggCGGCCC-CGGG--UCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 79504 0.66 0.560371
Target:  5'- -gCCGCCGGGGCgaGGCGuauCuGCgcgCCg -3'
miRNA:   3'- gaGGCGGCCCCGggUCGUu--GcCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 78241 0.68 0.459354
Target:  5'- aUCCGggccgacgugcaCCGGGcGCUCGGCGGCGuGCcCCu -3'
miRNA:   3'- gAGGC------------GGCCC-CGGGUCGUUGC-CGaGG- -5'
5228 3' -63.6 NC_001798.1 + 77172 0.68 0.450636
Target:  5'- --aCGCCGGGaGCgCCGccgucGCGACGGCaagUCCc -3'
miRNA:   3'- gagGCGGCCC-CG-GGU-----CGUUGCCG---AGG- -5'
5228 3' -63.6 NC_001798.1 + 76925 0.69 0.433477
Target:  5'- -gCCGuCCGGGGCCCccccccggaAGUcACGGCggcgCUg -3'
miRNA:   3'- gaGGC-GGCCCCGGG---------UCGuUGCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 75990 0.71 0.33195
Target:  5'- -cCCGCCGccccGGGCgCCGGCGGCagGGCcCCg -3'
miRNA:   3'- gaGGCGGC----CCCG-GGUCGUUG--CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 75456 0.69 0.407649
Target:  5'- ---gGCCGGGguggccgGCCCGGCcGCGGC-CCu -3'
miRNA:   3'- gaggCGGCCC-------CGGGUCGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 75262 0.68 0.477055
Target:  5'- -gCCGCCacGGcGGUCCGGCucGCGGCgcgcgaugCCg -3'
miRNA:   3'- gaGGCGG--CC-CCGGGUCGu-UGCCGa-------GG- -5'
5228 3' -63.6 NC_001798.1 + 74822 0.66 0.573744
Target:  5'- -cCCGCCGGGGaCgCGGCcGaagaagccgagaccuGCGGgUCCu -3'
miRNA:   3'- gaGGCGGCCCC-GgGUCG-U---------------UGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 74423 0.7 0.353759
Target:  5'- -aCCGCCGcGGCCCuGCAccucuACGGggCCa -3'
miRNA:   3'- gaGGCGGCcCCGGGuCGU-----UGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 74388 0.68 0.450636
Target:  5'- cCUCCGgcCCGGGGgCCguGGCGcCGGCggaCCu -3'
miRNA:   3'- -GAGGC--GGCCCCgGG--UCGUuGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 73891 0.68 0.486031
Target:  5'- uUUCGacgUGGGGCCCcGCGACGuGCugUCCg -3'
miRNA:   3'- gAGGCg--GCCCCGGGuCGUUGC-CG--AGG- -5'
5228 3' -63.6 NC_001798.1 + 73236 0.66 0.579498
Target:  5'- uUCCGCCggcccgGGGGCCCccGGgGACcuggaGGC-CCa -3'
miRNA:   3'- gAGGCGG------CCCCGGG--UCgUUG-----CCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 72221 0.68 0.486031
Target:  5'- -aUCGCCaggGGGGCCgucgagCAGCuGCGGC-CCg -3'
miRNA:   3'- gaGGCGG---CCCCGG------GUCGuUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 71847 0.68 0.477055
Target:  5'- -cCCGUCGGGcGCCUAGCcacgcccccuCGGUUCa -3'
miRNA:   3'- gaGGCGGCCC-CGGGUCGuu--------GCCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.