Results 81 - 100 of 221 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5228 | 3' | -63.6 | NC_001798.1 | + | 147058 | 0.66 | 0.560371 |
Target: 5'- -gCCGgaGGGGCCCccGCAccuCGGCggCCg -3' miRNA: 3'- gaGGCggCCCCGGGu-CGUu--GCCGa-GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 81534 | 0.66 | 0.560371 |
Target: 5'- -aCCGCgGcccaucGGGCCggCAGCuACGGCUCg -3' miRNA: 3'- gaGGCGgC------CCCGG--GUCGuUGCCGAGg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 2124 | 0.66 | 0.560371 |
Target: 5'- -gCgGCCaGGuccucGCCCGGCAGCGGCg-- -3' miRNA: 3'- gaGgCGGcCC-----CGGGUCGUUGCCGagg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 104162 | 0.66 | 0.550872 |
Target: 5'- -cCCGCCuGGGcGUCCAgGCAcaggGCGGCcagCCc -3' miRNA: 3'- gaGGCGG-CCC-CGGGU-CGU----UGCCGa--GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 80385 | 0.66 | 0.550872 |
Target: 5'- gUCCgGCCcaGGCCCuGGCGGCGGUgagcgUCCu -3' miRNA: 3'- gAGG-CGGccCCGGG-UCGUUGCCG-----AGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 61461 | 0.66 | 0.550872 |
Target: 5'- --gCGCCGGGGCCUccgGGCcccgGAgGGCUa- -3' miRNA: 3'- gagGCGGCCCCGGG---UCG----UUgCCGAgg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 146623 | 0.66 | 0.548032 |
Target: 5'- -cCCGCCGcauuaggcccccgcGGGCauCCGGCGGcCGGCcCCa -3' miRNA: 3'- gaGGCGGC--------------CCCG--GGUCGUU-GCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 102382 | 0.66 | 0.560371 |
Target: 5'- -cCCGCCuGGcGGUCggCGGCGAUGGCcCCc -3' miRNA: 3'- gaGGCGG-CC-CCGG--GUCGUUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 106978 | 0.66 | 0.560371 |
Target: 5'- aUCgGCCGGGGa--GGCGGCGGUg-- -3' miRNA: 3'- gAGgCGGCCCCgggUCGUUGCCGagg -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 149232 | 0.66 | 0.560371 |
Target: 5'- aCUCC-CCGuGGCCC-GCGGgGGCgucgCCg -3' miRNA: 3'- -GAGGcGGCcCCGGGuCGUUgCCGa---GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 74822 | 0.66 | 0.573744 |
Target: 5'- -cCCGCCGGGGaCgCGGCcGaagaagccgagaccuGCGGgUCCu -3' miRNA: 3'- gaGGCGGCCCC-GgGUCG-U---------------UGCCgAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 68694 | 0.66 | 0.569915 |
Target: 5'- --aCGCCccccaGGGGCCCcccaGGCAcagcuCGGCgUCCa -3' miRNA: 3'- gagGCGG-----CCCCGGG----UCGUu----GCCG-AGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 115513 | 0.66 | 0.569915 |
Target: 5'- aUCCGUaCGGGGCgUAcGUcGCGGCcCCg -3' miRNA: 3'- gAGGCG-GCCCCGgGU-CGuUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 66877 | 0.66 | 0.569915 |
Target: 5'- --gCGCCGGGGCUugggaaaggccaCGGgGGCGGggCCg -3' miRNA: 3'- gagGCGGCCCCGG------------GUCgUUGCCgaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 51173 | 0.66 | 0.569915 |
Target: 5'- --gCGuCCGaGGCCCgGGCGGCGGCgCCc -3' miRNA: 3'- gagGC-GGCcCCGGG-UCGUUGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 117447 | 0.66 | 0.569915 |
Target: 5'- cCUCgGCCgcGGGGCCCccccgcugcuAGaCAacGCGGCcgCCg -3' miRNA: 3'- -GAGgCGG--CCCCGGG----------UC-GU--UGCCGa-GG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 83783 | 0.66 | 0.569915 |
Target: 5'- --gCGCCggGGGGCCCGGacGCGGggCCc -3' miRNA: 3'- gagGCGG--CCCCGGGUCguUGCCgaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 11456 | 0.66 | 0.569915 |
Target: 5'- -gCCGCgGGGGCgCCuGUAuCGGCgCUg -3' miRNA: 3'- gaGGCGgCCCCG-GGuCGUuGCCGaGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 128409 | 0.66 | 0.569915 |
Target: 5'- gCUUCGgCGGGGCCUGaCGACcGcCUCCa -3' miRNA: 3'- -GAGGCgGCCCCGGGUcGUUGcC-GAGG- -5' |
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5228 | 3' | -63.6 | NC_001798.1 | + | 11246 | 0.66 | 0.568959 |
Target: 5'- -aCUG-CGGGGCCgaggacugacggaCAGCAGCacgacuggaccuGGCUCCg -3' miRNA: 3'- gaGGCgGCCCCGG-------------GUCGUUG------------CCGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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