miRNA display CGI


Results 101 - 120 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 3' -63.6 NC_001798.1 + 2429 0.67 0.541423
Target:  5'- -gUgGCUGGGcCCCGGCGGCuGGCggcgCCa -3'
miRNA:   3'- gaGgCGGCCCcGGGUCGUUG-CCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 21716 0.67 0.540481
Target:  5'- uCUCCGCCGcgcagccGGuguGCCCcugguGCGGCGGCgaCCg -3'
miRNA:   3'- -GAGGCGGC-------CC---CGGGu----CGUUGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 9507 0.67 0.538598
Target:  5'- gUCCGCCacgcgaauguaaguGGGGCCCGucGCcgaGGC-CCg -3'
miRNA:   3'- gAGGCGG--------------CCCCGGGU--CGuugCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 87717 0.67 0.532028
Target:  5'- cCUCCGCCGuaGCgCCGGCccccgcCGGC-CCg -3'
miRNA:   3'- -GAGGCGGCccCG-GGUCGuu----GCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 20176 0.67 0.532028
Target:  5'- -cUCGCacacGGGCUCGGCGGCGGgUUCa -3'
miRNA:   3'- gaGGCGgc--CCCGGGUCGUUGCCgAGG- -5'
5228 3' -63.6 NC_001798.1 + 104162 0.66 0.550872
Target:  5'- -cCCGCCuGGGcGUCCAgGCAcaggGCGGCcagCCc -3'
miRNA:   3'- gaGGCGG-CCC-CGGGU-CGU----UGCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 2124 0.66 0.560371
Target:  5'- -gCgGCCaGGuccucGCCCGGCAGCGGCg-- -3'
miRNA:   3'- gaGgCGGcCC-----CGGGUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 117447 0.66 0.569915
Target:  5'- cCUCgGCCgcGGGGCCCccccgcugcuAGaCAacGCGGCcgCCg -3'
miRNA:   3'- -GAGgCGG--CCCCGGG----------UC-GU--UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 83783 0.66 0.569915
Target:  5'- --gCGCCggGGGGCCCGGacGCGGggCCc -3'
miRNA:   3'- gagGCGG--CCCCGGGUCguUGCCgaGG- -5'
5228 3' -63.6 NC_001798.1 + 11456 0.66 0.569915
Target:  5'- -gCCGCgGGGGCgCCuGUAuCGGCgCUg -3'
miRNA:   3'- gaGGCGgCCCCG-GGuCGUuGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 128409 0.66 0.569915
Target:  5'- gCUUCGgCGGGGCCUGaCGACcGcCUCCa -3'
miRNA:   3'- -GAGGCgGCCCCGGGUcGUUGcC-GAGG- -5'
5228 3' -63.6 NC_001798.1 + 11246 0.66 0.568959
Target:  5'- -aCUG-CGGGGCCgaggacugacggaCAGCAGCacgacuggaccuGGCUCCg -3'
miRNA:   3'- gaGGCgGCCCCGG-------------GUCGUUG------------CCGAGG- -5'
5228 3' -63.6 NC_001798.1 + 149232 0.66 0.560371
Target:  5'- aCUCC-CCGuGGCCC-GCGGgGGCgucgCCg -3'
miRNA:   3'- -GAGGcGGCcCCGGGuCGUUgCCGa---GG- -5'
5228 3' -63.6 NC_001798.1 + 106978 0.66 0.560371
Target:  5'- aUCgGCCGGGGa--GGCGGCGGUg-- -3'
miRNA:   3'- gAGgCGGCCCCgggUCGUUGCCGagg -5'
5228 3' -63.6 NC_001798.1 + 102382 0.66 0.560371
Target:  5'- -cCCGCCuGGcGGUCggCGGCGAUGGCcCCc -3'
miRNA:   3'- gaGGCGG-CC-CCGG--GUCGUUGCCGaGG- -5'
5228 3' -63.6 NC_001798.1 + 79504 0.66 0.560371
Target:  5'- -gCCGCCGGGGCgaGGCGuauCuGCgcgCCg -3'
miRNA:   3'- gaGGCGGCCCCGggUCGUu--GcCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 41461 0.66 0.560371
Target:  5'- -cCCGCCGGGGgg-GGCGGuCGGCgggCCc -3'
miRNA:   3'- gaGGCGGCCCCgggUCGUU-GCCGa--GG- -5'
5228 3' -63.6 NC_001798.1 + 7171 0.66 0.560371
Target:  5'- uUCCGaCCGacGGGCCCccGCAccgggGCGGCgaCCa -3'
miRNA:   3'- gAGGC-GGC--CCCGGGu-CGU-----UGCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 147058 0.66 0.560371
Target:  5'- -gCCGgaGGGGCCCccGCAccuCGGCggCCg -3'
miRNA:   3'- gaGGCggCCCCGGGu-CGUu--GCCGa-GG- -5'
5228 3' -63.6 NC_001798.1 + 81534 0.66 0.560371
Target:  5'- -aCCGCgGcccaucGGGCCggCAGCuACGGCUCg -3'
miRNA:   3'- gaGGCGgC------CCCGG--GUCGuUGCCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.