miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5228 5' -55.9 NC_001798.1 + 87179 0.66 0.90778
Target:  5'- gUGCAGCgcGGGCGacGGGCggcUGG-CCAc -3'
miRNA:   3'- gACGUCG--UCUGCa-CCCGaa-ACCaGGU- -5'
5228 5' -55.9 NC_001798.1 + 31254 0.66 0.90778
Target:  5'- uUGCGGgCGGGgGUGGGaucugGGUCUg -3'
miRNA:   3'- gACGUC-GUCUgCACCCgaaa-CCAGGu -5'
5228 5' -55.9 NC_001798.1 + 41840 0.66 0.90778
Target:  5'- -aGC-GCAGACacgaGaGGCUUUGGUUCAg -3'
miRNA:   3'- gaCGuCGUCUGca--C-CCGAAACCAGGU- -5'
5228 5' -55.9 NC_001798.1 + 64502 0.66 0.894933
Target:  5'- -cGcCGGaGGGgGUGGGCgg-GGUCCAg -3'
miRNA:   3'- gaC-GUCgUCUgCACCCGaaaCCAGGU- -5'
5228 5' -55.9 NC_001798.1 + 139556 0.66 0.894266
Target:  5'- cCUGCAGUgguuccgGGACGUGGcggcCUUggaGGUCCc -3'
miRNA:   3'- -GACGUCG-------UCUGCACCc---GAAa--CCAGGu -5'
5228 5' -55.9 NC_001798.1 + 13075 0.66 0.888156
Target:  5'- uUGCAGgAGGCGcGGGCccggUGcUCCAg -3'
miRNA:   3'- gACGUCgUCUGCaCCCGaa--ACcAGGU- -5'
5228 5' -55.9 NC_001798.1 + 52557 0.66 0.888156
Target:  5'- cCUGCAGCGGcUGcUGGGCc-UGG-CCGa -3'
miRNA:   3'- -GACGUCGUCuGC-ACCCGaaACCaGGU- -5'
5228 5' -55.9 NC_001798.1 + 15385 0.66 0.883978
Target:  5'- -cGCGGCGGAggcgcccaccggaccCG-GGGUUgcgGGUCCGg -3'
miRNA:   3'- gaCGUCGUCU---------------GCaCCCGAaa-CCAGGU- -5'
5228 5' -55.9 NC_001798.1 + 36310 0.66 0.881147
Target:  5'- -gGCGGCGGggcGCGggccggggccgGGGCUcgcUGGUCCGc -3'
miRNA:   3'- gaCGUCGUC---UGCa----------CCCGAa--ACCAGGU- -5'
5228 5' -55.9 NC_001798.1 + 125237 0.66 0.880434
Target:  5'- gCUGUAGUAGGCGUugcguugGGGCacgGcGUCCu -3'
miRNA:   3'- -GACGUCGUCUGCA-------CCCGaaaC-CAGGu -5'
5228 5' -55.9 NC_001798.1 + 420 0.66 0.879001
Target:  5'- -cGCGGCAGccccucccccccgcGCGccacgGGGCUgcGGUCCc -3'
miRNA:   3'- gaCGUCGUC--------------UGCa----CCCGAaaCCAGGu -5'
5228 5' -55.9 NC_001798.1 + 3019 0.66 0.873913
Target:  5'- -cGCGGCGGGCc-GGGCUccGG-CCAg -3'
miRNA:   3'- gaCGUCGUCUGcaCCCGAaaCCaGGU- -5'
5228 5' -55.9 NC_001798.1 + 1964 0.66 0.873913
Target:  5'- cCUGCGcGCccagcgccgAGACGUcggGGGCgc-GGUCCAg -3'
miRNA:   3'- -GACGU-CG---------UCUGCA---CCCGaaaCCAGGU- -5'
5228 5' -55.9 NC_001798.1 + 20932 0.67 0.866457
Target:  5'- -aGCAugauucGCAGGCGUcguguugaggcGGGCg--GGUCCGg -3'
miRNA:   3'- gaCGU------CGUCUGCA-----------CCCGaaaCCAGGU- -5'
5228 5' -55.9 NC_001798.1 + 97840 0.67 0.826074
Target:  5'- cCUGaCGGCGGGCGcGGGCac-GGUCa- -3'
miRNA:   3'- -GAC-GUCGUCUGCaCCCGaaaCCAGgu -5'
5228 5' -55.9 NC_001798.1 + 30147 0.68 0.817427
Target:  5'- -aGCAGCGGGCGggGGGCcggGGUg-- -3'
miRNA:   3'- gaCGUCGUCUGCa-CCCGaaaCCAggu -5'
5228 5' -55.9 NC_001798.1 + 54806 0.68 0.817427
Target:  5'- aUGCccGCGGGCGUcGGGC-UUGGcgCCAc -3'
miRNA:   3'- gACGu-CGUCUGCA-CCCGaAACCa-GGU- -5'
5228 5' -55.9 NC_001798.1 + 134471 0.68 0.781199
Target:  5'- -cGCGGUuGGCGUGGGCgcgccUGGccgCCAu -3'
miRNA:   3'- gaCGUCGuCUGCACCCGaa---ACCa--GGU- -5'
5228 5' -55.9 NC_001798.1 + 152234 0.69 0.752563
Target:  5'- -cGCGGCGGcCGcucgGGGCcggGGUCCGc -3'
miRNA:   3'- gaCGUCGUCuGCa---CCCGaaaCCAGGU- -5'
5228 5' -55.9 NC_001798.1 + 20265 0.69 0.752563
Target:  5'- uCUGCAGCAGgcggccccACGUGcgcggccccaGGCg--GGUCCGg -3'
miRNA:   3'- -GACGUCGUC--------UGCAC----------CCGaaaCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.