Results 21 - 27 of 27 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 96983 | 0.7 | 0.672124 |
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Target: 5'- -cGCGGCGGGCGgcgGGGCcagGG-CCGg -3' miRNA: 3'- gaCGUCGUCUGCa--CCCGaaaCCaGGU- -5' |
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| 5228 | 5' | -55.9 | NC_001798.1 | + | 118626 | 0.7 | 0.702793 |
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Target: 5'- gCUGCAGCGGuGCGaGGGUcgagUGGUCUu -3' miRNA: 3'- -GACGUCGUC-UGCaCCCGaa--ACCAGGu -5' |
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| 5228 | 5' | -55.9 | NC_001798.1 | + | 15466 | 0.71 | 0.620456 |
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Target: 5'- -cGCgugGGUAGACGUGGGCgggggGGUCg- -3' miRNA: 3'- gaCG---UCGUCUGCACCCGaaa--CCAGgu -5' |
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| 5228 | 5' | -55.9 | NC_001798.1 | + | 35431 | 0.72 | 0.599794 |
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Target: 5'- aUGCGGCgggAGGCGUGGGCcgcUGGcgCCGc -3' miRNA: 3'- gACGUCG---UCUGCACCCGaa-ACCa-GGU- -5' |
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| 5228 | 5' | -55.9 | NC_001798.1 | + | 76649 | 0.74 | 0.470197 |
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Target: 5'- gCUGCGGCAGGCGaGGGCcaUGGaggcggCCAa -3' miRNA: 3'- -GACGUCGUCUGCaCCCGaaACCa-----GGU- -5' |
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| 5228 | 5' | -55.9 | NC_001798.1 | + | 41430 | 0.79 | 0.239012 |
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Target: 5'- -cGUAGCAGACGcGGGCguggggGGUCCAu -3' miRNA: 3'- gaCGUCGUCUGCaCCCGaaa---CCAGGU- -5' |
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| 5228 | 5' | -55.9 | NC_001798.1 | + | 71279 | 1.09 | 0.002703 |
|
Target: 5'- gCUGCAGCAGACGUGGGCUUUGGUCCAg -3' miRNA: 3'- -GACGUCGUCUGCACCCGAAACCAGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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