Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 13075 | 0.66 | 0.888156 |
|
Target: 5'- uUGCAGgAGGCGcGGGCccggUGcUCCAg -3' miRNA: 3'- gACGUCgUCUGCaCCCGaa--ACcAGGU- -5' |
|||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 15385 | 0.66 | 0.883978 |
|
Target: 5'- -cGCGGCGGAggcgcccaccggaccCG-GGGUUgcgGGUCCGg -3' miRNA: 3'- gaCGUCGUCU---------------GCaCCCGAaa-CCAGGU- -5' |
|||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 36310 | 0.66 | 0.881147 |
|
Target: 5'- -gGCGGCGGggcGCGggccggggccgGGGCUcgcUGGUCCGc -3' miRNA: 3'- gaCGUCGUC---UGCa----------CCCGAa--ACCAGGU- -5' |
|||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 125237 | 0.66 | 0.880434 |
|
Target: 5'- gCUGUAGUAGGCGUugcguugGGGCacgGcGUCCu -3' miRNA: 3'- -GACGUCGUCUGCA-------CCCGaaaC-CAGGu -5' |
|||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 420 | 0.66 | 0.879001 |
|
Target: 5'- -cGCGGCAGccccucccccccgcGCGccacgGGGCUgcGGUCCc -3' miRNA: 3'- gaCGUCGUC--------------UGCa----CCCGAaaCCAGGu -5' |
|||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 3019 | 0.66 | 0.873913 |
|
Target: 5'- -cGCGGCGGGCc-GGGCUccGG-CCAg -3' miRNA: 3'- gaCGUCGUCUGcaCCCGAaaCCaGGU- -5' |
|||||||
| 5228 | 5' | -55.9 | NC_001798.1 | + | 87179 | 0.66 | 0.90778 |
|
Target: 5'- gUGCAGCgcGGGCGacGGGCggcUGG-CCAc -3' miRNA: 3'- gACGUCG--UCUGCa-CCCGaa-ACCaGGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home