Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 420 | 0.66 | 0.879001 |
Target: 5'- -cGCGGCAGccccucccccccgcGCGccacgGGGCUgcGGUCCc -3' miRNA: 3'- gaCGUCGUC--------------UGCa----CCCGAaaCCAGGu -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 1964 | 0.66 | 0.873913 |
Target: 5'- cCUGCGcGCccagcgccgAGACGUcggGGGCgc-GGUCCAg -3' miRNA: 3'- -GACGU-CG---------UCUGCA---CCCGaaaCCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 3019 | 0.66 | 0.873913 |
Target: 5'- -cGCGGCGGGCc-GGGCUccGG-CCAg -3' miRNA: 3'- gaCGUCGUCUGcaCCCGAaaCCaGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 13075 | 0.66 | 0.888156 |
Target: 5'- uUGCAGgAGGCGcGGGCccggUGcUCCAg -3' miRNA: 3'- gACGUCgUCUGCaCCCGaa--ACcAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 15385 | 0.66 | 0.883978 |
Target: 5'- -cGCGGCGGAggcgcccaccggaccCG-GGGUUgcgGGUCCGg -3' miRNA: 3'- gaCGUCGUCU---------------GCaCCCGAaa-CCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 15466 | 0.71 | 0.620456 |
Target: 5'- -cGCgugGGUAGACGUGGGCgggggGGUCg- -3' miRNA: 3'- gaCG---UCGUCUGCACCCGaaa--CCAGgu -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 20265 | 0.69 | 0.752563 |
Target: 5'- uCUGCAGCAGgcggccccACGUGcgcggccccaGGCg--GGUCCGg -3' miRNA: 3'- -GACGUCGUC--------UGCAC----------CCGaaaCCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 20932 | 0.67 | 0.866457 |
Target: 5'- -aGCAugauucGCAGGCGUcguguugaggcGGGCg--GGUCCGg -3' miRNA: 3'- gaCGU------CGUCUGCA-----------CCCGaaaCCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 30147 | 0.68 | 0.817427 |
Target: 5'- -aGCAGCGGGCGggGGGCcggGGUg-- -3' miRNA: 3'- gaCGUCGUCUGCa-CCCGaaaCCAggu -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 31254 | 0.66 | 0.90778 |
Target: 5'- uUGCGGgCGGGgGUGGGaucugGGUCUg -3' miRNA: 3'- gACGUC-GUCUgCACCCgaaa-CCAGGu -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 35431 | 0.72 | 0.599794 |
Target: 5'- aUGCGGCgggAGGCGUGGGCcgcUGGcgCCGc -3' miRNA: 3'- gACGUCG---UCUGCACCCGaa-ACCa-GGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 36310 | 0.66 | 0.881147 |
Target: 5'- -gGCGGCGGggcGCGggccggggccgGGGCUcgcUGGUCCGc -3' miRNA: 3'- gaCGUCGUC---UGCa----------CCCGAa--ACCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 41430 | 0.79 | 0.239012 |
Target: 5'- -cGUAGCAGACGcGGGCguggggGGUCCAu -3' miRNA: 3'- gaCGUCGUCUGCaCCCGaaa---CCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 41840 | 0.66 | 0.90778 |
Target: 5'- -aGC-GCAGACacgaGaGGCUUUGGUUCAg -3' miRNA: 3'- gaCGuCGUCUGca--C-CCGAAACCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 52557 | 0.66 | 0.888156 |
Target: 5'- cCUGCAGCGGcUGcUGGGCc-UGG-CCGa -3' miRNA: 3'- -GACGUCGUCuGC-ACCCGaaACCaGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 54806 | 0.68 | 0.817427 |
Target: 5'- aUGCccGCGGGCGUcGGGC-UUGGcgCCAc -3' miRNA: 3'- gACGu-CGUCUGCA-CCCGaAACCa-GGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 64502 | 0.66 | 0.894933 |
Target: 5'- -cGcCGGaGGGgGUGGGCgg-GGUCCAg -3' miRNA: 3'- gaC-GUCgUCUgCACCCGaaaCCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 71279 | 1.09 | 0.002703 |
Target: 5'- gCUGCAGCAGACGUGGGCUUUGGUCCAg -3' miRNA: 3'- -GACGUCGUCUGCACCCGAAACCAGGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 76649 | 0.74 | 0.470197 |
Target: 5'- gCUGCGGCAGGCGaGGGCcaUGGaggcggCCAa -3' miRNA: 3'- -GACGUCGUCUGCaCCCGaaACCa-----GGU- -5' |
|||||||
5228 | 5' | -55.9 | NC_001798.1 | + | 87179 | 0.66 | 0.90778 |
Target: 5'- gUGCAGCgcGGGCGacGGGCggcUGG-CCAc -3' miRNA: 3'- gACGUCG--UCUGCa-CCCGaa-ACCaGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home