miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 3' -56.3 NC_001798.1 + 2458 0.68 0.809517
Target:  5'- -aGCCgcccuGCGGGUCGGGgcccucGGCGGg -3'
miRNA:   3'- aaUGGac---CGCCCAGUCCacua--UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 2487 0.67 0.843379
Target:  5'- -gGCC-GGCGGGUCAGcGccgcgGGgcGCGGc -3'
miRNA:   3'- aaUGGaCCGCCCAGUC-Ca----CUauCGCC- -5'
5230 3' -56.3 NC_001798.1 + 4360 0.69 0.763623
Target:  5'- -cGCC-GGCGGGgggCGcgccggcggcGGUGGUGGUGGu -3'
miRNA:   3'- aaUGGaCCGCCCa--GU----------CCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 12335 0.67 0.859184
Target:  5'- aUACCgggaucGGaCGGGUCgAGGUGGcuGUGGg -3'
miRNA:   3'- aAUGGa-----CC-GCCCAG-UCCACUauCGCC- -5'
5230 3' -56.3 NC_001798.1 + 15034 0.66 0.881329
Target:  5'- --uCCUGGCGGG--AGcGUGG-GGCGGa -3'
miRNA:   3'- aauGGACCGCCCagUC-CACUaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 20360 0.66 0.901475
Target:  5'- cUGCCgGGCGGGUUcGG----GGCGGc -3'
miRNA:   3'- aAUGGaCCGCCCAGuCCacuaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 27214 0.67 0.843379
Target:  5'- -aGCCcccggGGCGGGgcgCGGG-GGaGGCGGc -3'
miRNA:   3'- aaUGGa----CCGCCCa--GUCCaCUaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 28615 0.66 0.873434
Target:  5'- -cGCCUGGCccgacggGGGUCcuGGGcgcGcgAGCGGg -3'
miRNA:   3'- aaUGGACCG-------CCCAG--UCCa--CuaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 29892 0.69 0.763623
Target:  5'- -cACCcGGCugcGGGUUggGGGUGGUcGCGGg -3'
miRNA:   3'- aaUGGaCCG---CCCAG--UCCACUAuCGCC- -5'
5230 3' -56.3 NC_001798.1 + 30923 0.66 0.894989
Target:  5'- -gGCCgacggugagGGCggcggGGGUCGGGcgGggGGCGGg -3'
miRNA:   3'- aaUGGa--------CCG-----CCCAGUCCa-CuaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 33276 0.67 0.826804
Target:  5'- --uCUUGGUGGGUgggCGGGcUGGcUGGCGGg -3'
miRNA:   3'- aauGGACCGCCCA---GUCC-ACU-AUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 36094 0.69 0.763623
Target:  5'- -----gGGUGGG-CGGGUGGUGGgGGg -3'
miRNA:   3'- aauggaCCGCCCaGUCCACUAUCgCC- -5'
5230 3' -56.3 NC_001798.1 + 36415 0.72 0.572142
Target:  5'- cUGCCgGGCGGGgc-GGUGG-GGCGGg -3'
miRNA:   3'- aAUGGaCCGCCCaguCCACUaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 43183 0.67 0.851382
Target:  5'- -cGCCUGGCcGGUCGGGgacAUGGUa- -3'
miRNA:   3'- aaUGGACCGcCCAGUCCac-UAUCGcc -5'
5230 3' -56.3 NC_001798.1 + 45908 0.72 0.551971
Target:  5'- -aACCaaaaucGGCGGGUCucGGGgGGUGGCGGu -3'
miRNA:   3'- aaUGGa-----CCGCCCAG--UCCaCUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 69174 0.72 0.562032
Target:  5'- -aGCCcgaUGGCGGGcCAGGUGGgggaggucGGUGGg -3'
miRNA:   3'- aaUGG---ACCGCCCaGUCCACUa-------UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 69274 1.09 0.002634
Target:  5'- gUUACCUGGCGGGUCAGGUGAUAGCGGg -3'
miRNA:   3'- -AAUGGACCGCCCAGUCCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 74851 0.67 0.835185
Target:  5'- -gACCU-GCGGGUCcuggAGGUGggGGCa- -3'
miRNA:   3'- aaUGGAcCGCCCAG----UCCACuaUCGcc -5'
5230 3' -56.3 NC_001798.1 + 81274 0.71 0.643715
Target:  5'- -gACCUuGCGGGg-GGG-GAUGGCGGa -3'
miRNA:   3'- aaUGGAcCGCCCagUCCaCUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 83680 0.69 0.734606
Target:  5'- aUGCaCUGGCGGG-CGGGacGGUGGCu- -3'
miRNA:   3'- aAUG-GACCGCCCaGUCCa-CUAUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.