miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 3' -56.3 NC_001798.1 + 29892 0.69 0.763623
Target:  5'- -cACCcGGCugcGGGUUggGGGUGGUcGCGGg -3'
miRNA:   3'- aaUGGaCCG---CCCAG--UCCACUAuCGCC- -5'
5230 3' -56.3 NC_001798.1 + 83680 0.69 0.734606
Target:  5'- aUGCaCUGGCGGG-CGGGacGGUGGCu- -3'
miRNA:   3'- aAUG-GACCGCCCaGUCCa-CUAUCGcc -5'
5230 3' -56.3 NC_001798.1 + 107383 0.7 0.674406
Target:  5'- gUACCUGcaGCGcGG-CGGGaGGUGGCGGg -3'
miRNA:   3'- aAUGGAC--CGC-CCaGUCCaCUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 81274 0.71 0.643715
Target:  5'- -gACCUuGCGGGg-GGG-GAUGGCGGa -3'
miRNA:   3'- aaUGGAcCGCCCagUCCaCUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 93119 0.71 0.606794
Target:  5'- -gGCCcggcgGGCGGGUUugAgcagcgccuggccucGGUGAUGGCGGg -3'
miRNA:   3'- aaUGGa----CCGCCCAG--U---------------CCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 146092 0.71 0.606794
Target:  5'- -gGCgaGGCGGG-CgggcgaaggaaggggGGGUGGUGGCGGc -3'
miRNA:   3'- aaUGgaCCGCCCaG---------------UCCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 148033 0.71 0.6027
Target:  5'- cUACCgcgugggcgcgGGCGGGgggguGGUGGUAGUGGu -3'
miRNA:   3'- aAUGGa----------CCGCCCagu--CCACUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 36415 0.72 0.572142
Target:  5'- cUGCCgGGCGGGgc-GGUGG-GGCGGg -3'
miRNA:   3'- aAUGGaCCGCCCaguCCACUaUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 69174 0.72 0.562032
Target:  5'- -aGCCcgaUGGCGGGcCAGGUGGgggaggucGGUGGg -3'
miRNA:   3'- aaUGG---ACCGCCCaGUCCACUa-------UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 45908 0.72 0.551971
Target:  5'- -aACCaaaaucGGCGGGUCucGGGgGGUGGCGGu -3'
miRNA:   3'- aaUGGa-----CCGCCCAG--UCCaCUAUCGCC- -5'
5230 3' -56.3 NC_001798.1 + 102015 0.75 0.419185
Target:  5'- -gGCCuUGGCGGGguagCgGGGUGGUugGGCGGg -3'
miRNA:   3'- aaUGG-ACCGCCCa---G-UCCACUA--UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 148391 0.79 0.242832
Target:  5'- -gGCgUGGCGGG-CAGGUGugcgGGCGGg -3'
miRNA:   3'- aaUGgACCGCCCaGUCCACua--UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 148284 0.79 0.242832
Target:  5'- -gGCgUGGCGGG-CAGGUGugcgGGCGGg -3'
miRNA:   3'- aaUGgACCGCCCaGUCCACua--UCGCC- -5'
5230 3' -56.3 NC_001798.1 + 69274 1.09 0.002634
Target:  5'- gUUACCUGGCGGGUCAGGUGAUAGCGGg -3'
miRNA:   3'- -AAUGGACCGCCCAGUCCACUAUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.