miRNA display CGI


Results 21 - 40 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 51105 0.66 0.562704
Target:  5'- aGAUGG-CgagcgaagAGCCgCcCCCGCGCcgucGCCGGGa -3'
miRNA:   3'- -CUGCCaG--------UCGG-GaGGGCGCG----CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 46574 0.66 0.562704
Target:  5'- -cCGGagGGCCCcgggggcaaaCCCGCGCGUcccguuCGGGg -3'
miRNA:   3'- cuGCCagUCGGGa---------GGGCGCGCG------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 111221 0.66 0.562704
Target:  5'- cACGGUCccGGCCg-CCaGCGCGUCGcGGa -3'
miRNA:   3'- cUGCCAG--UCGGgaGGgCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 29974 0.66 0.562704
Target:  5'- aGCGGUCGGgggaCC-CCCGUGgGCCGu- -3'
miRNA:   3'- cUGCCAGUCg---GGaGGGCGCgCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 146991 0.66 0.561765
Target:  5'- cGAgGGUCcGCCuCUugccucggggaccCCCggGCGgGCCGGGg -3'
miRNA:   3'- -CUgCCAGuCGG-GA-------------GGG--CGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 101781 0.66 0.553332
Target:  5'- uGGCGuuaacuaaGGCCCggCCUcCGCGCCGGGc -3'
miRNA:   3'- -CUGCcag-----UCGGGa-GGGcGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 24021 0.66 0.553332
Target:  5'- cGAUGGggUGGCUCcagaaCCCGCGCGuggcgcCCGGGg -3'
miRNA:   3'- -CUGCCa-GUCGGGa----GGGCGCGC------GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 111602 0.66 0.544007
Target:  5'- cGGCGGggCGG-CCUCCUGgaGCcCCGGGg -3'
miRNA:   3'- -CUGCCa-GUCgGGAGGGCg-CGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 47406 0.66 0.550529
Target:  5'- cGugGGUUAcgcaggcccucgcuGCUCUCCCGUacccCGCCGGu -3'
miRNA:   3'- -CugCCAGU--------------CGGGAGGGCGc---GCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 24887 0.66 0.553332
Target:  5'- -cUGGUCgccggGGCCCUgggCCCgGCGCuGCCGcGGa -3'
miRNA:   3'- cuGCCAG-----UCGGGA---GGG-CGCG-CGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 31876 0.66 0.553332
Target:  5'- gGGCGG-CGGCCCgCCCccggaagaggcGCGgGUCGGa -3'
miRNA:   3'- -CUGCCaGUCGGGaGGG-----------CGCgCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 76007 0.66 0.553332
Target:  5'- cGGCGGcagGGCCCcgugCCCGCcCGCCcuGGGc -3'
miRNA:   3'- -CUGCCag-UCGGGa---GGGCGcGCGG--CCC- -5'
5230 5' -64.9 NC_001798.1 + 109432 0.66 0.553332
Target:  5'- -cCGG-CGGCCCgCCUGCG-GCUGGa -3'
miRNA:   3'- cuGCCaGUCGGGaGGGCGCgCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 3508 0.66 0.553332
Target:  5'- cACGG-CGGCCg-CCaCGUGCGCCaGGc -3'
miRNA:   3'- cUGCCaGUCGGgaGG-GCGCGCGGcCC- -5'
5230 5' -64.9 NC_001798.1 + 22863 0.67 0.489295
Target:  5'- gGACcGUC-GCCC-CgCCGCGCGgcCCGGGu -3'
miRNA:   3'- -CUGcCAGuCGGGaG-GGCGCGC--GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 16201 0.67 0.498245
Target:  5'- cACGGgccGCCCUCCgcaCGCGCcGCCuguGGGg -3'
miRNA:   3'- cUGCCaguCGGGAGG---GCGCG-CGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 98173 0.67 0.498245
Target:  5'- uGACGGuguuuccggaaUCAcGCCCaCCCaGCGCGCCGc- -3'
miRNA:   3'- -CUGCC-----------AGU-CGGGaGGG-CGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 91778 0.67 0.506363
Target:  5'- gGGCGGcCAcGCCC-CCUGCcgaugacGCGCgGGGc -3'
miRNA:   3'- -CUGCCaGU-CGGGaGGGCG-------CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 23815 0.67 0.507268
Target:  5'- --gGGcCGGCCC-CCCGCcC-CCGGGg -3'
miRNA:   3'- cugCCaGUCGGGaGGGCGcGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150319 0.67 0.489295
Target:  5'- -uCGGUCugAGCCUgggUCauGCGCGaCCGGGg -3'
miRNA:   3'- cuGCCAG--UCGGG---AGggCGCGC-GGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.