miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 71734 0.68 0.404446
Target:  5'- -cCGGcCAGCCCagccUCCUGCGCGagaCGGc -3'
miRNA:   3'- cuGCCaGUCGGG----AGGGCGCGCg--GCCc -5'
5230 5' -64.9 NC_001798.1 + 51149 0.68 0.404446
Target:  5'- cGCGGUCAcCCCgggUCCCGaCGCGCguccgaggccCGGGc -3'
miRNA:   3'- cUGCCAGUcGGG---AGGGC-GCGCG----------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 71084 0.68 0.404446
Target:  5'- -cCGcGUCAGCCCgcggucggCgUGCGCGCCcccGGGg -3'
miRNA:   3'- cuGC-CAGUCGGGa-------GgGCGCGCGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 134953 0.68 0.404446
Target:  5'- uGCGGggcgccgCGGCCacccaUgCCGCGUGCCuGGGg -3'
miRNA:   3'- cUGCCa------GUCGGg----AgGGCGCGCGG-CCC- -5'
5230 5' -64.9 NC_001798.1 + 152053 0.68 0.403645
Target:  5'- gGGCGGcgcaCGGCCCacgggggUCCCccgaccgcuuaaGCGgGCCGGGg -3'
miRNA:   3'- -CUGCCa---GUCGGG-------AGGG------------CGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 154170 0.68 0.412513
Target:  5'- cGGCGua-GGCCCggagCCggaGCGCGUCGGGg -3'
miRNA:   3'- -CUGCcagUCGGGa---GGg--CGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 39420 0.68 0.412513
Target:  5'- -cCGGggcgCGGCCg-UCCGCGUGCgGGGg -3'
miRNA:   3'- cuGCCa---GUCGGgaGGGCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 96897 0.68 0.445745
Target:  5'- cGACGGUaccuGCCC-CaCGC-CGCCGGGc -3'
miRNA:   3'- -CUGCCAgu--CGGGaGgGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150678 0.68 0.437296
Target:  5'- cGCGGcgUCuucGCCCaCCCGCGCGCCu-- -3'
miRNA:   3'- cUGCC--AGu--CGGGaGGGCGCGCGGccc -5'
5230 5' -64.9 NC_001798.1 + 87997 0.68 0.437296
Target:  5'- gGGgGGUCGGCaugcgacggcgUCUCCCggggGCGCuugGCCGGGg -3'
miRNA:   3'- -CUgCCAGUCG-----------GGAGGG----CGCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 27455 0.68 0.437296
Target:  5'- uGCGGcaCAGCCUgcuaguccccgUCCUGcCGCGCgGGGg -3'
miRNA:   3'- cUGCCa-GUCGGG-----------AGGGC-GCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 71596 0.68 0.436456
Target:  5'- aGGCGGUCGGCCUgucgggcggcgUCCUcagccagacgcugGCGCGCaucauGGGc -3'
miRNA:   3'- -CUGCCAGUCGGG-----------AGGG-------------CGCGCGg----CCC- -5'
5230 5' -64.9 NC_001798.1 + 112531 0.68 0.428939
Target:  5'- cGugGGUU-GCUCUCgCGCGUGCCGc- -3'
miRNA:   3'- -CugCCAGuCGGGAGgGCGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 53973 0.68 0.428939
Target:  5'- cGGCGGUCAGCgacguccugggCCaCCUGaCGCGCCuGGc -3'
miRNA:   3'- -CUGCCAGUCG-----------GGaGGGC-GCGCGGcCC- -5'
5230 5' -64.9 NC_001798.1 + 56960 0.68 0.428939
Target:  5'- aACGGcUGGCCCUCCagcacCGCGUgGGGg -3'
miRNA:   3'- cUGCCaGUCGGGAGGgc---GCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 3455 0.68 0.428109
Target:  5'- aGGCuGGUCagcaggaAGCCCUUCUGCGCG-CGGu -3'
miRNA:   3'- -CUG-CCAG-------UCGGGAGGGCGCGCgGCCc -5'
5230 5' -64.9 NC_001798.1 + 83399 0.68 0.420678
Target:  5'- cGugGGUCAcCCCgaggUCCGUcaGCGCCGcGGc -3'
miRNA:   3'- -CugCCAGUcGGGa---GGGCG--CGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 28993 0.69 0.396481
Target:  5'- gGGCGGcgcCGGCCaa-CCGCGCGCCGc- -3'
miRNA:   3'- -CUGCCa--GUCGGgagGGCGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 103042 0.69 0.39569
Target:  5'- cGGCGGccucgcgUCGcaccCCCUCgCGCGuCGCCGGGu -3'
miRNA:   3'- -CUGCC-------AGUc---GGGAGgGCGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 147165 0.69 0.388616
Target:  5'- -cCGGgUAGCCg-CCCG-GCGCCGGGc -3'
miRNA:   3'- cuGCCaGUCGGgaGGGCgCGCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.