miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 1442 0.69 0.348682
Target:  5'- cGCGGUgCGagugcGCCUcguccucgcagaagUCCgGCGCGCCGGGc -3'
miRNA:   3'- cUGCCA-GU-----CGGG--------------AGGgCGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 47817 0.69 0.348682
Target:  5'- cGCGGgcucucaCGGCCCcggcCCCGCGCGCgcuccuccacccccCGGGg -3'
miRNA:   3'- cUGCCa------GUCGGGa---GGGCGCGCG--------------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 9149 0.69 0.350862
Target:  5'- cGCGGgcgCGGCgCCg-CC-CGCGCCGGGg -3'
miRNA:   3'- cUGCCa--GUCG-GGagGGcGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 27260 0.69 0.350862
Target:  5'- cGCGGgaccgCAGCCCcgUgGCGCGCgGGGg -3'
miRNA:   3'- cUGCCa----GUCGGGagGgCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 31664 0.69 0.350862
Target:  5'- cGCGGcCgGGCCCgcgccgCCCGcCGUGCCGGu -3'
miRNA:   3'- cUGCCaG-UCGGGa-----GGGC-GCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 34857 0.69 0.358201
Target:  5'- gGGCGGg-GGaCgCCUUCCGCccgGCGCCGGGc -3'
miRNA:   3'- -CUGCCagUC-G-GGAGGGCG---CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 24687 0.69 0.358201
Target:  5'- -cCGGagccCGGCCCgccgcgccCCCGCGC-CCGGGg -3'
miRNA:   3'- cuGCCa---GUCGGGa-------GGGCGCGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 20348 0.69 0.358201
Target:  5'- aGGCGGUUGGCgCUgCCGgGCGgguUCGGGg -3'
miRNA:   3'- -CUGCCAGUCGgGAgGGCgCGC---GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 152255 0.69 0.365647
Target:  5'- --gGGUCcGCCCgggagCUCGUGCcggGCCGGGg -3'
miRNA:   3'- cugCCAGuCGGGa----GGGCGCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 135055 0.69 0.365647
Target:  5'- aGGCGGcCGGCcgCCUCCUGCcCGCCuuucGGGa -3'
miRNA:   3'- -CUGCCaGUCG--GGAGGGCGcGCGG----CCC- -5'
5230 5' -64.9 NC_001798.1 + 637 0.69 0.365647
Target:  5'- --aGGUCAGagccccagaCCC-CCCGCGgGCgCGGGa -3'
miRNA:   3'- cugCCAGUC---------GGGaGGGCGCgCG-GCCC- -5'
5230 5' -64.9 NC_001798.1 + 70316 0.69 0.380855
Target:  5'- cGGCGGUCGGCCCggcggaggCgCggGCGUGCUGGc -3'
miRNA:   3'- -CUGCCAGUCGGGa-------GgG--CGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 150886 0.69 0.380855
Target:  5'- --gGGUC-GCCCccgcaccgccgCCCcCGCGCCGGGg -3'
miRNA:   3'- cugCCAGuCGGGa----------GGGcGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 77682 0.69 0.380855
Target:  5'- aGAUGG-CGGCCCa---GCGCGCCcGGGg -3'
miRNA:   3'- -CUGCCaGUCGGGagggCGCGCGG-CCC- -5'
5230 5' -64.9 NC_001798.1 + 147165 0.69 0.388616
Target:  5'- -cCGGgUAGCCg-CCCG-GCGCCGGGc -3'
miRNA:   3'- cuGCCaGUCGGgaGGGCgCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 141092 0.69 0.388616
Target:  5'- uGACGG-CAGaaCUCCUGuCGCuacGCCGGGa -3'
miRNA:   3'- -CUGCCaGUCggGAGGGC-GCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 1200 0.69 0.388616
Target:  5'- cGCGGcCAGCaCCgucCCCGCGCGgcCCGcGGc -3'
miRNA:   3'- cUGCCaGUCG-GGa--GGGCGCGC--GGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 103042 0.69 0.39569
Target:  5'- cGGCGGccucgcgUCGcaccCCCUCgCGCGuCGCCGGGu -3'
miRNA:   3'- -CUGCC-------AGUc---GGGAGgGCGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 28993 0.69 0.396481
Target:  5'- gGGCGGcgcCGGCCaa-CCGCGCGCCGc- -3'
miRNA:   3'- -CUGCCa--GUCGGgagGGCGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 106088 0.69 0.396481
Target:  5'- uGGCGGUCGcggcGaCCCggCgCCGCGacCGCCGGGu -3'
miRNA:   3'- -CUGCCAGU----C-GGGa-G-GGCGC--GCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.