Results 101 - 120 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 91778 | 0.67 | 0.506363 |
Target: 5'- gGGCGGcCAcGCCC-CCUGCcgaugacGCGCgGGGc -3' miRNA: 3'- -CUGCCaGU-CGGGaGGGCG-------CGCGgCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 23815 | 0.67 | 0.507268 |
Target: 5'- --gGGcCGGCCC-CCCGCcC-CCGGGg -3' miRNA: 3'- cugCCaGUCGGGaGGGCGcGcGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 25387 | 0.67 | 0.507268 |
Target: 5'- uGGCGccCGGCCCUcauguucgacCCgCGCGCGCUGGc -3' miRNA: 3'- -CUGCcaGUCGGGA----------GG-GCGCGCGGCCc -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 54673 | 0.66 | 0.513625 |
Target: 5'- cGCGG-CGcGCCCgCUCGCGgcucagcgcgaggcCGCCGGGg -3' miRNA: 3'- cUGCCaGU-CGGGaGGGCGC--------------GCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 115584 | 0.66 | 0.51636 |
Target: 5'- uGGCGG-CAGCgCCUcgCCCaCG-GCCGGGu -3' miRNA: 3'- -CUGCCaGUCG-GGA--GGGcGCgCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 83745 | 0.66 | 0.51636 |
Target: 5'- aGCGGcccccagaaaCAGCCC-CgCCGCcagcaacagaaGCGCCGGGg -3' miRNA: 3'- cUGCCa---------GUCGGGaG-GGCG-----------CGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 2779 | 0.66 | 0.51636 |
Target: 5'- cGGCGGagcUCAGCaggcgcgggCUCCgCGgcaGCGCCGGGc -3' miRNA: 3'- -CUGCC---AGUCGg--------GAGG-GCg--CGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 124336 | 0.66 | 0.51636 |
Target: 5'- gGACGGcgCGGaaagcgucaUCCgCCCGaccaGCGCCGGGu -3' miRNA: 3'- -CUGCCa-GUC---------GGGaGGGCg---CGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 124007 | 0.66 | 0.51636 |
Target: 5'- --gGGUCGcucuGUCC-CCCGgGCaGCCGGGc -3' miRNA: 3'- cugCCAGU----CGGGaGGGCgCG-CGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 25781 | 0.66 | 0.51636 |
Target: 5'- cGCGGgaccUGGCCUUCgCCG-GCGCCGuGGa -3' miRNA: 3'- cUGCCa---GUCGGGAG-GGCgCGCGGC-CC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 153637 | 0.66 | 0.51636 |
Target: 5'- aGGgGGUCGGaggggaggcguaCCUUCCCGCGCGgcgcguCCGcGGg -3' miRNA: 3'- -CUgCCAGUC------------GGGAGGGCGCGC------GGC-CC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 85236 | 0.66 | 0.525516 |
Target: 5'- cGAC-GUCGcGCCCgccccCCCGCGgcCGCgCGGGg -3' miRNA: 3'- -CUGcCAGU-CGGGa----GGGCGC--GCG-GCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 48836 | 0.66 | 0.525516 |
Target: 5'- cGCGGguccCGGaucccuccccCCCUCuCCGC-CGCCGGGc -3' miRNA: 3'- cUGCCa---GUC----------GGGAG-GGCGcGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 139009 | 0.66 | 0.534733 |
Target: 5'- cGGCGauaUC-GCCCUCCCGgGCGuuCCGGu -3' miRNA: 3'- -CUGCc--AGuCGGGAGGGCgCGC--GGCCc -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 80324 | 0.66 | 0.534733 |
Target: 5'- uGGCGcUCGGCCUUggagcucgggaCCCa-GCGCCGGGa -3' miRNA: 3'- -CUGCcAGUCGGGA-----------GGGcgCGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 34112 | 0.66 | 0.534733 |
Target: 5'- gGGCGGUgggcguacgGGCCCgaCCCGCGCcugcccccCCGGGa -3' miRNA: 3'- -CUGCCAg--------UCGGGa-GGGCGCGc-------GGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 129667 | 0.66 | 0.534733 |
Target: 5'- cGACGuGcgcgUGGUCa-CCCGgGCGCCGGGg -3' miRNA: 3'- -CUGC-Ca---GUCGGgaGGGCgCGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 30823 | 0.66 | 0.534733 |
Target: 5'- cGCGGaCGGCCCcgcgcUCCC-UGuCGCUGGGg -3' miRNA: 3'- cUGCCaGUCGGG-----AGGGcGC-GCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 111783 | 0.66 | 0.542147 |
Target: 5'- cGCGGgu-GCCCgugaucacgacaUCCGUGCGCCGGu -3' miRNA: 3'- cUGCCaguCGGGa-----------GGGCGCGCGGCCc -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 40142 | 0.66 | 0.543077 |
Target: 5'- uGGCGGgu-GUCCUCCgagggggCGCGUGUCGGa -3' miRNA: 3'- -CUGCCaguCGGGAGG-------GCGCGCGGCCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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