Results 81 - 100 of 137 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 147165 | 0.69 | 0.388616 |
Target: 5'- -cCGGgUAGCCg-CCCG-GCGCCGGGc -3' miRNA: 3'- cuGCCaGUCGGgaGGGCgCGCGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 141092 | 0.69 | 0.388616 |
Target: 5'- uGACGG-CAGaaCUCCUGuCGCuacGCCGGGa -3' miRNA: 3'- -CUGCCaGUCggGAGGGC-GCG---CGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 1200 | 0.69 | 0.388616 |
Target: 5'- cGCGGcCAGCaCCgucCCCGCGCGgcCCGcGGc -3' miRNA: 3'- cUGCCaGUCG-GGa--GGGCGCGC--GGC-CC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 77682 | 0.69 | 0.380855 |
Target: 5'- aGAUGG-CGGCCCa---GCGCGCCcGGGg -3' miRNA: 3'- -CUGCCaGUCGGGagggCGCGCGG-CCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 70316 | 0.69 | 0.380855 |
Target: 5'- cGGCGGUCGGCCCggcggaggCgCggGCGUGCUGGc -3' miRNA: 3'- -CUGCCAGUCGGGa-------GgG--CGCGCGGCCc -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 150886 | 0.69 | 0.380855 |
Target: 5'- --gGGUC-GCCCccgcaccgccgCCCcCGCGCCGGGg -3' miRNA: 3'- cugCCAGuCGGGa----------GGGcGCGCGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 152255 | 0.69 | 0.365647 |
Target: 5'- --gGGUCcGCCCgggagCUCGUGCcggGCCGGGg -3' miRNA: 3'- cugCCAGuCGGGa----GGGCGCG---CGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 135055 | 0.69 | 0.365647 |
Target: 5'- aGGCGGcCGGCcgCCUCCUGCcCGCCuuucGGGa -3' miRNA: 3'- -CUGCCaGUCG--GGAGGGCGcGCGG----CCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 637 | 0.69 | 0.365647 |
Target: 5'- --aGGUCAGagccccagaCCC-CCCGCGgGCgCGGGa -3' miRNA: 3'- cugCCAGUC---------GGGaGGGCGCgCG-GCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 20348 | 0.69 | 0.358201 |
Target: 5'- aGGCGGUUGGCgCUgCCGgGCGgguUCGGGg -3' miRNA: 3'- -CUGCCAGUCGgGAgGGCgCGC---GGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 24687 | 0.69 | 0.358201 |
Target: 5'- -cCGGagccCGGCCCgccgcgccCCCGCGC-CCGGGg -3' miRNA: 3'- cuGCCa---GUCGGGa-------GGGCGCGcGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 34857 | 0.69 | 0.358201 |
Target: 5'- gGGCGGg-GGaCgCCUUCCGCccgGCGCCGGGc -3' miRNA: 3'- -CUGCCagUC-G-GGAGGGCG---CGCGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 9149 | 0.69 | 0.350862 |
Target: 5'- cGCGGgcgCGGCgCCg-CC-CGCGCCGGGg -3' miRNA: 3'- cUGCCa--GUCG-GGagGGcGCGCGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 31664 | 0.69 | 0.350862 |
Target: 5'- cGCGGcCgGGCCCgcgccgCCCGcCGUGCCGGu -3' miRNA: 3'- cUGCCaG-UCGGGa-----GGGC-GCGCGGCCc -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 27260 | 0.69 | 0.350862 |
Target: 5'- cGCGGgaccgCAGCCCcgUgGCGCGCgGGGg -3' miRNA: 3'- cUGCCa----GUCGGGagGgCGCGCGgCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 47817 | 0.69 | 0.348682 |
Target: 5'- cGCGGgcucucaCGGCCCcggcCCCGCGCGCgcuccuccacccccCGGGg -3' miRNA: 3'- cUGCCa------GUCGGGa---GGGCGCGCG--------------GCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 1442 | 0.69 | 0.348682 |
Target: 5'- cGCGGUgCGagugcGCCUcguccucgcagaagUCCgGCGCGCCGGGc -3' miRNA: 3'- cUGCCA-GU-----CGGG--------------AGGgCGCGCGGCCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 92931 | 0.7 | 0.343631 |
Target: 5'- aGGCGGUCgucgGGCCCgccgccguggcCCUGCGUGCCcGGa -3' miRNA: 3'- -CUGCCAG----UCGGGa----------GGGCGCGCGGcCC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 28356 | 0.7 | 0.343631 |
Target: 5'- cGGCGG-CGGCCC-CCCGCGUccccGcCCGcGGa -3' miRNA: 3'- -CUGCCaGUCGGGaGGGCGCG----C-GGC-CC- -5' |
|||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 51456 | 0.7 | 0.336507 |
Target: 5'- cGACGGUCgAGaUUCUCgcgggCCGCGUGUCGGGc -3' miRNA: 3'- -CUGCCAG-UC-GGGAG-----GGCGCGCGGCCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home