miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 34857 0.69 0.358201
Target:  5'- gGGCGGg-GGaCgCCUUCCGCccgGCGCCGGGc -3'
miRNA:   3'- -CUGCCagUC-G-GGAGGGCG---CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 38457 0.73 0.206799
Target:  5'- gGugGGUCAucGCCCUCCucccaCGCGCacGCCGGc -3'
miRNA:   3'- -CugCCAGU--CGGGAGG-----GCGCG--CGGCCc -5'
5230 5' -64.9 NC_001798.1 + 39420 0.68 0.412513
Target:  5'- -cCGGggcgCGGCCg-UCCGCGUGCgGGGg -3'
miRNA:   3'- cuGCCa---GUCGGgaGGGCGCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 39826 0.72 0.253744
Target:  5'- uGGCGGaucgUCGGCuCCcCgCCGCGCuGCCGGGc -3'
miRNA:   3'- -CUGCC----AGUCG-GGaG-GGCGCG-CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 40142 0.66 0.543077
Target:  5'- uGGCGGgu-GUCCUCCgagggggCGCGUGUCGGa -3'
miRNA:   3'- -CUGCCaguCGGGAGG-------GCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 41927 0.71 0.265299
Target:  5'- aACGGacaCGGCCUgauauUCCCGCGCGUgcuCGGGa -3'
miRNA:   3'- cUGCCa--GUCGGG-----AGGGCGCGCG---GCCC- -5'
5230 5' -64.9 NC_001798.1 + 43008 0.67 0.454285
Target:  5'- cGACGGcCAGgCCgCCCGgggggaGCGCgGGGc -3'
miRNA:   3'- -CUGCCaGUCgGGaGGGCg-----CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 43055 0.71 0.302518
Target:  5'- cGGCGcGUgAGCCgCcggCCgaGCGCGCCGGGc -3'
miRNA:   3'- -CUGC-CAgUCGG-Ga--GGg-CGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 43149 0.74 0.192904
Target:  5'- cGCGGgccCAGUCgUCCCGCGCcGCCGcGGc -3'
miRNA:   3'- cUGCCa--GUCGGgAGGGCGCG-CGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 43338 0.67 0.454285
Target:  5'- gGGCGG-CAgugccGCCC-CCCGCGuCGuccCCGGGg -3'
miRNA:   3'- -CUGCCaGU-----CGGGaGGGCGC-GC---GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 46574 0.66 0.562704
Target:  5'- -cCGGagGGCCCcgggggcaaaCCCGCGCGUcccguuCGGGg -3'
miRNA:   3'- cuGCCagUCGGGa---------GGGCGCGCG------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 47201 0.68 0.412513
Target:  5'- --gGGUCAGCCUgagCCCGCcCuGuuGGGa -3'
miRNA:   3'- cugCCAGUCGGGa--GGGCGcG-CggCCC- -5'
5230 5' -64.9 NC_001798.1 + 47406 0.66 0.550529
Target:  5'- cGugGGUUAcgcaggcccucgcuGCUCUCCCGUacccCGCCGGu -3'
miRNA:   3'- -CugCCAGU--------------CGGGAGGGCGc---GCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 47671 0.67 0.462913
Target:  5'- cGCGGcgCuGGCCCgaugCgCGCGCGCCcgaGGGg -3'
miRNA:   3'- cUGCCa-G-UCGGGa---GgGCGCGCGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 47817 0.69 0.348682
Target:  5'- cGCGGgcucucaCGGCCCcggcCCCGCGCGCgcuccuccacccccCGGGg -3'
miRNA:   3'- cUGCCa------GUCGGGa---GGGCGCGCG--------------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 48836 0.66 0.525516
Target:  5'- cGCGGguccCGGaucccuccccCCCUCuCCGC-CGCCGGGc -3'
miRNA:   3'- cUGCCa---GUC----------GGGAG-GGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 51105 0.66 0.562704
Target:  5'- aGAUGG-CgagcgaagAGCCgCcCCCGCGCcgucGCCGGGa -3'
miRNA:   3'- -CUGCCaG--------UCGG-GaGGGCGCG----CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 51149 0.68 0.404446
Target:  5'- cGCGGUCAcCCCgggUCCCGaCGCGCguccgaggccCGGGc -3'
miRNA:   3'- cUGCCAGUcGGG---AGGGC-GCGCG----------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 51456 0.7 0.336507
Target:  5'- cGACGGUCgAGaUUCUCgcgggCCGCGUGUCGGGc -3'
miRNA:   3'- -CUGCCAG-UC-GGGAG-----GGCGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 51752 0.77 0.116811
Target:  5'- cGGCGGgcaaaaacCAGcCCCUCCCGCGCGauGGGu -3'
miRNA:   3'- -CUGCCa-------GUC-GGGAGGGCGCGCggCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.