miRNA display CGI


Results 61 - 80 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 53973 0.68 0.428939
Target:  5'- cGGCGGUCAGCgacguccugggCCaCCUGaCGCGCCuGGc -3'
miRNA:   3'- -CUGCCAGUCG-----------GGaGGGC-GCGCGGcCC- -5'
5230 5' -64.9 NC_001798.1 + 54673 0.66 0.513625
Target:  5'- cGCGG-CGcGCCCgCUCGCGgcucagcgcgaggcCGCCGGGg -3'
miRNA:   3'- cUGCCaGU-CGGGaGGGCGC--------------GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 56960 0.68 0.428939
Target:  5'- aACGGcUGGCCCUCCagcacCGCGUgGGGg -3'
miRNA:   3'- cUGCCaGUCGGGAGGgc---GCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 58878 0.67 0.480421
Target:  5'- --gGGUCccgGGCCCggaaCCCccggagGCGCGCCGGc -3'
miRNA:   3'- cugCCAG---UCGGGa---GGG------CGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 60829 0.68 0.411702
Target:  5'- gGGCGGcCAGUCUUCCguccgcuCGCGCGgcgaCGGGa -3'
miRNA:   3'- -CUGCCaGUCGGGAGG-------GCGCGCg---GCCC- -5'
5230 5' -64.9 NC_001798.1 + 61186 0.79 0.086941
Target:  5'- aGAUGGUCGGCCUgcaCCggCGCGCGCCGGcGg -3'
miRNA:   3'- -CUGCCAGUCGGGa--GG--GCGCGCGGCC-C- -5'
5230 5' -64.9 NC_001798.1 + 66821 0.71 0.277276
Target:  5'- cGCGGagccCGGCCCggugCCgGCGCccagGCCGGGg -3'
miRNA:   3'- cUGCCa---GUCGGGa---GGgCGCG----CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 69311 1.08 0.000671
Target:  5'- gGACGGUCAGCCCUCCCGCGCGCCGGGc -3'
miRNA:   3'- -CUGCCAGUCGGGAGGGCGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 70316 0.69 0.380855
Target:  5'- cGGCGGUCGGCCCggcggaggCgCggGCGUGCUGGc -3'
miRNA:   3'- -CUGCCAGUCGGGa-------GgG--CGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 71084 0.68 0.404446
Target:  5'- -cCGcGUCAGCCCgcggucggCgUGCGCGCCcccGGGg -3'
miRNA:   3'- cuGC-CAGUCGGGa-------GgGCGCGCGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 71596 0.68 0.436456
Target:  5'- aGGCGGUCGGCCUgucgggcggcgUCCUcagccagacgcugGCGCGCaucauGGGc -3'
miRNA:   3'- -CUGCCAGUCGGG-----------AGGG-------------CGCGCGg----CCC- -5'
5230 5' -64.9 NC_001798.1 + 71734 0.68 0.404446
Target:  5'- -cCGGcCAGCCCagccUCCUGCGCGagaCGGc -3'
miRNA:   3'- cuGCCaGUCGGG----AGGGCGCGCg--GCCc -5'
5230 5' -64.9 NC_001798.1 + 75347 0.67 0.480421
Target:  5'- uGCGGUC-GCCgUaCCCgGCGCacCCGGGg -3'
miRNA:   3'- cUGCCAGuCGGgA-GGG-CGCGc-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 76007 0.66 0.553332
Target:  5'- cGGCGGcagGGCCCcgugCCCGCcCGCCcuGGGc -3'
miRNA:   3'- -CUGCCag-UCGGGa---GGGCGcGCGG--CCC- -5'
5230 5' -64.9 NC_001798.1 + 77406 0.68 0.404446
Target:  5'- cGGCGG-CcGCCgaCCUgguaguccagGCGCGCCGGGc -3'
miRNA:   3'- -CUGCCaGuCGGgaGGG----------CGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 77682 0.69 0.380855
Target:  5'- aGAUGG-CGGCCCa---GCGCGCCcGGGg -3'
miRNA:   3'- -CUGCCaGUCGGGagggCGCGCGG-CCC- -5'
5230 5' -64.9 NC_001798.1 + 79966 0.7 0.329492
Target:  5'- aGCGG-CGGCgCCgcgUCCGC-CGCCGGGc -3'
miRNA:   3'- cUGCCaGUCG-GGa--GGGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 80324 0.66 0.534733
Target:  5'- uGGCGcUCGGCCUUggagcucgggaCCCa-GCGCCGGGa -3'
miRNA:   3'- -CUGCcAGUCGGGA-----------GGGcgCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 82076 0.66 0.562704
Target:  5'- cGCGGcCGGCCCacCCCG-GCGCCu-- -3'
miRNA:   3'- cUGCCaGUCGGGa-GGGCgCGCGGccc -5'
5230 5' -64.9 NC_001798.1 + 83399 0.68 0.420678
Target:  5'- cGugGGUCAcCCCgaggUCCGUcaGCGCCGcGGc -3'
miRNA:   3'- -CugCCAGUcGGGa---GGGCG--CGCGGC-CC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.