miRNA display CGI


Results 81 - 100 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 83745 0.66 0.51636
Target:  5'- aGCGGcccccagaaaCAGCCC-CgCCGCcagcaacagaaGCGCCGGGg -3'
miRNA:   3'- cUGCCa---------GUCGGGaG-GGCG-----------CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 85236 0.66 0.525516
Target:  5'- cGAC-GUCGcGCCCgccccCCCGCGgcCGCgCGGGg -3'
miRNA:   3'- -CUGcCAGU-CGGGa----GGGCGC--GCG-GCCC- -5'
5230 5' -64.9 NC_001798.1 + 86874 0.79 0.084809
Target:  5'- cGGCGGUCGcGCUUUUCCGC-CGCCGGGa -3'
miRNA:   3'- -CUGCCAGU-CGGGAGGGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 87997 0.68 0.437296
Target:  5'- gGGgGGUCGGCaugcgacggcgUCUCCCggggGCGCuugGCCGGGg -3'
miRNA:   3'- -CUgCCAGUCG-----------GGAGGG----CGCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 90401 0.72 0.242059
Target:  5'- cGCGGUUGGgCCggcgcguUCCCGCG-GCCGGGc -3'
miRNA:   3'- cUGCCAGUCgGG-------AGGGCGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 91514 0.71 0.289682
Target:  5'- cGGCGGaCccgcgcccgGGuCCCUUCUGCGCGuCCGGGg -3'
miRNA:   3'- -CUGCCaG---------UC-GGGAGGGCGCGC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 91778 0.67 0.506363
Target:  5'- gGGCGGcCAcGCCC-CCUGCcgaugacGCGCgGGGc -3'
miRNA:   3'- -CUGCCaGU-CGGGaGGGCG-------CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 92931 0.7 0.343631
Target:  5'- aGGCGGUCgucgGGCCCgccgccguggcCCUGCGUGCCcGGa -3'
miRNA:   3'- -CUGCCAG----UCGGGa----------GGGCGCGCGGcCC- -5'
5230 5' -64.9 NC_001798.1 + 93262 0.67 0.462913
Target:  5'- aACGcccgCGGCCCgcgCCgGCGcCGUCGGGg -3'
miRNA:   3'- cUGCca--GUCGGGa--GGgCGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 95012 0.67 0.480421
Target:  5'- gGGCGGcgCGGgCCUggaggccggggCCCGCGCGCUGauGGa -3'
miRNA:   3'- -CUGCCa-GUCgGGA-----------GGGCGCGCGGC--CC- -5'
5230 5' -64.9 NC_001798.1 + 95595 0.72 0.237191
Target:  5'- -cUGGUCAGCCagcUCgGCGcCGCCGGGg -3'
miRNA:   3'- cuGCCAGUCGGga-GGgCGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 96350 0.66 0.562704
Target:  5'- uGCGG-CGGCa--CCUGCG-GCCGGGg -3'
miRNA:   3'- cUGCCaGUCGggaGGGCGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 96897 0.68 0.445745
Target:  5'- cGACGGUaccuGCCC-CaCGC-CGCCGGGc -3'
miRNA:   3'- -CUGCCAgu--CGGGaGgGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 98173 0.67 0.498245
Target:  5'- uGACGGuguuuccggaaUCAcGCCCaCCCaGCGCGCCGc- -3'
miRNA:   3'- -CUGCC-----------AGU-CGGGaGGG-CGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 98602 0.74 0.179834
Target:  5'- cGGCGGccccggCGGCCC-CCCGCGCcUCGGGc -3'
miRNA:   3'- -CUGCCa-----GUCGGGaGGGCGCGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 101781 0.66 0.553332
Target:  5'- uGGCGuuaacuaaGGCCCggCCUcCGCGCCGGGc -3'
miRNA:   3'- -CUGCcag-----UCGGGa-GGGcGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 102176 0.73 0.206799
Target:  5'- uGAUGGUUucguggGGCCCggaagCCUggcgcgcgGCGCGCCGGGa -3'
miRNA:   3'- -CUGCCAG------UCGGGa----GGG--------CGCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 103042 0.69 0.39569
Target:  5'- cGGCGGccucgcgUCGcaccCCCUCgCGCGuCGCCGGGu -3'
miRNA:   3'- -CUGCC-------AGUc---GGGAGgGCGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 105294 0.67 0.462913
Target:  5'- cGCGGUCuccAGCgCCUCCaGgGCGUCGGc -3'
miRNA:   3'- cUGCCAG---UCG-GGAGGgCgCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 106088 0.69 0.396481
Target:  5'- uGGCGGUCGcggcGaCCCggCgCCGCGacCGCCGGGu -3'
miRNA:   3'- -CUGCCAGU----C-GGGa-G-GGCGC--GCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.