Results 121 - 137 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5230 | 5' | -64.9 | NC_001798.1 | + | 147206 | 0.73 | 0.202074 |
Target: 5'- cGGCGGUcCGGCCCgggccCCCGgcggaGCGCgGGGg -3' miRNA: 3'- -CUGCCA-GUCGGGa----GGGCg----CGCGgCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 149976 | 0.72 | 0.259469 |
Target: 5'- cGACGGg-GGCgCggcgCCCGCGgaCGCCGGGg -3' miRNA: 3'- -CUGCCagUCGgGa---GGGCGC--GCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 150138 | 0.66 | 0.544007 |
Target: 5'- cGCGG--GGCCCgaguccgaCCCGCGCcucuuCCGGGg -3' miRNA: 3'- cUGCCagUCGGGa-------GGGCGCGc----GGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 150252 | 0.71 | 0.295404 |
Target: 5'- cGCGccCGGCCCUCCCgacccgcGCGCGUCGGu -3' miRNA: 3'- cUGCcaGUCGGGAGGG-------CGCGCGGCCc -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 150319 | 0.67 | 0.489295 |
Target: 5'- -uCGGUCugAGCCUgggUCauGCGCGaCCGGGg -3' miRNA: 3'- cuGCCAG--UCGGG---AGggCGCGC-GGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 150678 | 0.68 | 0.437296 |
Target: 5'- cGCGGcgUCuucGCCCaCCCGCGCGCCu-- -3' miRNA: 3'- cUGCC--AGu--CGGGaGGGCGCGCGGccc -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 150886 | 0.69 | 0.380855 |
Target: 5'- --gGGUC-GCCCccgcaccgccgCCCcCGCGCCGGGg -3' miRNA: 3'- cugCCAGuCGGGa----------GGGcGCGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 151281 | 0.67 | 0.471626 |
Target: 5'- cACGGccgccUCGG-CCUCCaCGCGgGuCCGGGg -3' miRNA: 3'- cUGCC-----AGUCgGGAGG-GCGCgC-GGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 152053 | 0.68 | 0.403645 |
Target: 5'- gGGCGGcgcaCGGCCCacgggggUCCCccgaccgcuuaaGCGgGCCGGGg -3' miRNA: 3'- -CUGCCa---GUCGGG-------AGGG------------CGCgCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 152200 | 0.74 | 0.175655 |
Target: 5'- cGGgGGUC-GCCCUCUCacCGUGCCGGGg -3' miRNA: 3'- -CUgCCAGuCGGGAGGGc-GCGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 152255 | 0.69 | 0.365647 |
Target: 5'- --gGGUCcGCCCgggagCUCGUGCcggGCCGGGg -3' miRNA: 3'- cugCCAGuCGGGa----GGGCGCG---CGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 153009 | 0.73 | 0.226665 |
Target: 5'- gGGCGGUCgccggggcggAGUCCgggCCCGCGCGgCGGc -3' miRNA: 3'- -CUGCCAG----------UCGGGa--GGGCGCGCgGCCc -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 153225 | 0.7 | 0.318494 |
Target: 5'- cGACGGcCcgGGCCCgcggcggcggaggaCCCGCGCGCCGc- -3' miRNA: 3'- -CUGCCaG--UCGGGa-------------GGGCGCGCGGCcc -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 153403 | 0.81 | 0.061271 |
Target: 5'- cGCGGUCGGCCCgCUCGCGCGCCcaGGa -3' miRNA: 3'- cUGCCAGUCGGGaGGGCGCGCGGc-CC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 153637 | 0.66 | 0.51636 |
Target: 5'- aGGgGGUCGGaggggaggcguaCCUUCCCGCGCGgcgcguCCGcGGg -3' miRNA: 3'- -CUgCCAGUC------------GGGAGGGCGCGC------GGC-CC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 154170 | 0.68 | 0.412513 |
Target: 5'- cGGCGua-GGCCCggagCCggaGCGCGUCGGGg -3' miRNA: 3'- -CUGCcagUCGGGa---GGg--CGCGCGGCCC- -5' |
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5230 | 5' | -64.9 | NC_001798.1 | + | 154489 | 0.74 | 0.171562 |
Target: 5'- cGCGGgcgCcGCCCcucccCCCGCGCGCCGcGGg -3' miRNA: 3'- cUGCCa--GuCGGGa----GGGCGCGCGGC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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