miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 141092 0.69 0.388616
Target:  5'- uGACGG-CAGaaCUCCUGuCGCuacGCCGGGa -3'
miRNA:   3'- -CUGCCaGUCggGAGGGC-GCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 139009 0.66 0.534733
Target:  5'- cGGCGauaUC-GCCCUCCCGgGCGuuCCGGu -3'
miRNA:   3'- -CUGCc--AGuCGGGAGGGCgCGC--GGCCc -5'
5230 5' -64.9 NC_001798.1 + 137380 0.68 0.404446
Target:  5'- cGGCGcaccccUCGGCguUCUCCCGgGCGaCCGGGa -3'
miRNA:   3'- -CUGCc-----AGUCG--GGAGGGCgCGC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 135770 0.67 0.462913
Target:  5'- cGGCGGcCGGCCg-CCgGCcCGCCGGa -3'
miRNA:   3'- -CUGCCaGUCGGgaGGgCGcGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 135055 0.69 0.365647
Target:  5'- aGGCGGcCGGCcgCCUCCUGCcCGCCuuucGGGa -3'
miRNA:   3'- -CUGCCaGUCG--GGAGGGCGcGCGG----CCC- -5'
5230 5' -64.9 NC_001798.1 + 134953 0.68 0.404446
Target:  5'- uGCGGggcgccgCGGCCacccaUgCCGCGUGCCuGGGg -3'
miRNA:   3'- cUGCCa------GUCGGg----AgGGCGCGCGG-CCC- -5'
5230 5' -64.9 NC_001798.1 + 134289 0.74 0.179834
Target:  5'- -cCGGUgGGCCCucuucgUCCCGCuGCGCCuGGGc -3'
miRNA:   3'- cuGCCAgUCGGG------AGGGCG-CGCGG-CCC- -5'
5230 5' -64.9 NC_001798.1 + 129667 0.66 0.534733
Target:  5'- cGACGuGcgcgUGGUCa-CCCGgGCGCCGGGg -3'
miRNA:   3'- -CUGC-Ca---GUCGGgaGGGCgCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 124336 0.66 0.51636
Target:  5'- gGACGGcgCGGaaagcgucaUCCgCCCGaccaGCGCCGGGu -3'
miRNA:   3'- -CUGCCa-GUC---------GGGaGGGCg---CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 124007 0.66 0.51636
Target:  5'- --gGGUCGcucuGUCC-CCCGgGCaGCCGGGc -3'
miRNA:   3'- cugCCAGU----CGGGaGGGCgCG-CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 115584 0.66 0.51636
Target:  5'- uGGCGG-CAGCgCCUcgCCCaCG-GCCGGGu -3'
miRNA:   3'- -CUGCCaGUCG-GGA--GGGcGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 112531 0.68 0.428939
Target:  5'- cGugGGUU-GCUCUCgCGCGUGCCGc- -3'
miRNA:   3'- -CugCCAGuCGGGAGgGCGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 111783 0.66 0.542147
Target:  5'- cGCGGgu-GCCCgugaucacgacaUCCGUGCGCCGGu -3'
miRNA:   3'- cUGCCaguCGGGa-----------GGGCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 111724 0.67 0.480421
Target:  5'- uGACGGU-GGCCCgcuuggccCCCGCGCccCCGGc -3'
miRNA:   3'- -CUGCCAgUCGGGa-------GGGCGCGc-GGCCc -5'
5230 5' -64.9 NC_001798.1 + 111602 0.66 0.544007
Target:  5'- cGGCGGggCGG-CCUCCUGgaGCcCCGGGg -3'
miRNA:   3'- -CUGCCa-GUCgGGAGGGCg-CGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 111221 0.66 0.562704
Target:  5'- cACGGUCccGGCCg-CCaGCGCGUCGcGGa -3'
miRNA:   3'- cUGCCAG--UCGGgaGGgCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 109432 0.66 0.553332
Target:  5'- -cCGG-CGGCCCgCCUGCG-GCUGGa -3'
miRNA:   3'- cuGCCaGUCGGGaGGGCGCgCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 106088 0.69 0.396481
Target:  5'- uGGCGGUCGcggcGaCCCggCgCCGCGacCGCCGGGu -3'
miRNA:   3'- -CUGCCAGU----C-GGGa-G-GGCGC--GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 105294 0.67 0.462913
Target:  5'- cGCGGUCuccAGCgCCUCCaGgGCGUCGGc -3'
miRNA:   3'- cUGCCAG---UCG-GGAGGgCgCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 103042 0.69 0.39569
Target:  5'- cGGCGGccucgcgUCGcaccCCCUCgCGCGuCGCCGGGu -3'
miRNA:   3'- -CUGCC-------AGUc---GGGAGgGCGC-GCGGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.