miRNA display CGI


Results 101 - 120 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 43008 0.67 0.454285
Target:  5'- cGACGGcCAGgCCgCCCGgggggaGCGCgGGGc -3'
miRNA:   3'- -CUGCCaGUCgGGaGGGCg-----CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 96897 0.68 0.445745
Target:  5'- cGACGGUaccuGCCC-CaCGC-CGCCGGGc -3'
miRNA:   3'- -CUGCCAgu--CGGGaGgGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150678 0.68 0.437296
Target:  5'- cGCGGcgUCuucGCCCaCCCGCGCGCCu-- -3'
miRNA:   3'- cUGCC--AGu--CGGGaGGGCGCGCGGccc -5'
5230 5' -64.9 NC_001798.1 + 87997 0.68 0.437296
Target:  5'- gGGgGGUCGGCaugcgacggcgUCUCCCggggGCGCuugGCCGGGg -3'
miRNA:   3'- -CUgCCAGUCG-----------GGAGGG----CGCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 27455 0.68 0.437296
Target:  5'- uGCGGcaCAGCCUgcuaguccccgUCCUGcCGCGCgGGGg -3'
miRNA:   3'- cUGCCa-GUCGGG-----------AGGGC-GCGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 58878 0.67 0.480421
Target:  5'- --gGGUCccgGGCCCggaaCCCccggagGCGCGCCGGc -3'
miRNA:   3'- cugCCAG---UCGGGa---GGG------CGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 75347 0.67 0.480421
Target:  5'- uGCGGUC-GCCgUaCCCgGCGCacCCGGGg -3'
miRNA:   3'- cUGCCAGuCGGgA-GGG-CGCGc-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 115584 0.66 0.51636
Target:  5'- uGGCGG-CAGCgCCUcgCCCaCG-GCCGGGu -3'
miRNA:   3'- -CUGCCaGUCG-GGA--GGGcGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 25781 0.66 0.51636
Target:  5'- cGCGGgaccUGGCCUUCgCCG-GCGCCGuGGa -3'
miRNA:   3'- cUGCCa---GUCGGGAG-GGCgCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 54673 0.66 0.513625
Target:  5'- cGCGG-CGcGCCCgCUCGCGgcucagcgcgaggcCGCCGGGg -3'
miRNA:   3'- cUGCCaGU-CGGGaGGGCGC--------------GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 25387 0.67 0.507268
Target:  5'- uGGCGccCGGCCCUcauguucgacCCgCGCGCGCUGGc -3'
miRNA:   3'- -CUGCcaGUCGGGA----------GG-GCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 23815 0.67 0.507268
Target:  5'- --gGGcCGGCCC-CCCGCcC-CCGGGg -3'
miRNA:   3'- cugCCaGUCGGGaGGGCGcGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 91778 0.67 0.506363
Target:  5'- gGGCGGcCAcGCCC-CCUGCcgaugacGCGCgGGGc -3'
miRNA:   3'- -CUGCCaGU-CGGGaGGGCG-------CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 98173 0.67 0.498245
Target:  5'- uGACGGuguuuccggaaUCAcGCCCaCCCaGCGCGCCGc- -3'
miRNA:   3'- -CUGCC-----------AGU-CGGGaGGG-CGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 16201 0.67 0.498245
Target:  5'- cACGGgccGCCCUCCgcaCGCGCcGCCuguGGGg -3'
miRNA:   3'- cUGCCaguCGGGAGG---GCGCG-CGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 22863 0.67 0.489295
Target:  5'- gGACcGUC-GCCC-CgCCGCGCGgcCCGGGu -3'
miRNA:   3'- -CUGcCAGuCGGGaG-GGCGCGC--GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 150319 0.67 0.489295
Target:  5'- -uCGGUCugAGCCUgggUCauGCGCGaCCGGGg -3'
miRNA:   3'- cuGCCAG--UCGGG---AGggCGCGC-GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 95012 0.67 0.480421
Target:  5'- gGGCGGcgCGGgCCUggaggccggggCCCGCGCGCUGauGGa -3'
miRNA:   3'- -CUGCCa-GUCgGGA-----------GGGCGCGCGGC--CC- -5'
5230 5' -64.9 NC_001798.1 + 4103 0.67 0.480421
Target:  5'- gGGCGGgcUCGGCCCUgggCGgGCucgGCCGGGg -3'
miRNA:   3'- -CUGCC--AGUCGGGAgg-GCgCG---CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 111724 0.67 0.480421
Target:  5'- uGACGGU-GGCCCgcuuggccCCCGCGCccCCGGc -3'
miRNA:   3'- -CUGCCAgUCGGGa-------GGGCGCGc-GGCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.