miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 29974 0.66 0.562704
Target:  5'- aGCGGUCGGgggaCC-CCCGUGgGCCGu- -3'
miRNA:   3'- cUGCCAGUCg---GGaGGGCGCgCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 111221 0.66 0.562704
Target:  5'- cACGGUCccGGCCg-CCaGCGCGUCGcGGa -3'
miRNA:   3'- cUGCCAG--UCGGgaGGgCGCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 46574 0.66 0.562704
Target:  5'- -cCGGagGGCCCcgggggcaaaCCCGCGCGUcccguuCGGGg -3'
miRNA:   3'- cuGCCagUCGGGa---------GGGCGCGCG------GCCC- -5'
5230 5' -64.9 NC_001798.1 + 51105 0.66 0.562704
Target:  5'- aGAUGG-CgagcgaagAGCCgCcCCCGCGCcgucGCCGGGa -3'
miRNA:   3'- -CUGCCaG--------UCGG-GaGGGCGCG----CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 82076 0.66 0.562704
Target:  5'- cGCGGcCGGCCCacCCCG-GCGCCu-- -3'
miRNA:   3'- cUGCCaGUCGGGa-GGGCgCGCGGccc -5'
5230 5' -64.9 NC_001798.1 + 47406 0.66 0.550529
Target:  5'- cGugGGUUAcgcaggcccucgcuGCUCUCCCGUacccCGCCGGu -3'
miRNA:   3'- -CugCCAGU--------------CGGGAGGGCGc---GCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 111602 0.66 0.544007
Target:  5'- cGGCGGggCGG-CCUCCUGgaGCcCCGGGg -3'
miRNA:   3'- -CUGCCa-GUCgGGAGGGCg-CGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 124336 0.66 0.51636
Target:  5'- gGACGGcgCGGaaagcgucaUCCgCCCGaccaGCGCCGGGu -3'
miRNA:   3'- -CUGCCa-GUC---------GGGaGGGCg---CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 2779 0.66 0.51636
Target:  5'- cGGCGGagcUCAGCaggcgcgggCUCCgCGgcaGCGCCGGGc -3'
miRNA:   3'- -CUGCC---AGUCGg--------GAGG-GCg--CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 83745 0.66 0.51636
Target:  5'- aGCGGcccccagaaaCAGCCC-CgCCGCcagcaacagaaGCGCCGGGg -3'
miRNA:   3'- cUGCCa---------GUCGGGaG-GGCG-----------CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 85236 0.66 0.525516
Target:  5'- cGAC-GUCGcGCCCgccccCCCGCGgcCGCgCGGGg -3'
miRNA:   3'- -CUGcCAGU-CGGGa----GGGCGC--GCG-GCCC- -5'
5230 5' -64.9 NC_001798.1 + 48836 0.66 0.525516
Target:  5'- cGCGGguccCGGaucccuccccCCCUCuCCGC-CGCCGGGc -3'
miRNA:   3'- cUGCCa---GUC----------GGGAG-GGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 129667 0.66 0.534733
Target:  5'- cGACGuGcgcgUGGUCa-CCCGgGCGCCGGGg -3'
miRNA:   3'- -CUGC-Ca---GUCGGgaGGGCgCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 30823 0.66 0.534733
Target:  5'- cGCGGaCGGCCCcgcgcUCCC-UGuCGCUGGGg -3'
miRNA:   3'- cUGCCaGUCGGG-----AGGGcGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 34112 0.66 0.534733
Target:  5'- gGGCGGUgggcguacgGGCCCgaCCCGCGCcugcccccCCGGGa -3'
miRNA:   3'- -CUGCCAg--------UCGGGa-GGGCGCGc-------GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 80324 0.66 0.534733
Target:  5'- uGGCGcUCGGCCUUggagcucgggaCCCa-GCGCCGGGa -3'
miRNA:   3'- -CUGCcAGUCGGGA-----------GGGcgCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 139009 0.66 0.534733
Target:  5'- cGGCGauaUC-GCCCUCCCGgGCGuuCCGGu -3'
miRNA:   3'- -CUGCc--AGuCGGGAGGGCgCGC--GGCCc -5'
5230 5' -64.9 NC_001798.1 + 111783 0.66 0.542147
Target:  5'- cGCGGgu-GCCCgugaucacgacaUCCGUGCGCCGGu -3'
miRNA:   3'- cUGCCaguCGGGa-----------GGGCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 40142 0.66 0.543077
Target:  5'- uGGCGGgu-GUCCUCCgagggggCGCGUGUCGGa -3'
miRNA:   3'- -CUGCCaguCGGGAGG-------GCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 150138 0.66 0.544007
Target:  5'- cGCGG--GGCCCgaguccgaCCCGCGCcucuuCCGGGg -3'
miRNA:   3'- cUGCCagUCGGGa-------GGGCGCGc----GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.