miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5230 5' -64.9 NC_001798.1 + 30823 0.66 0.534733
Target:  5'- cGCGGaCGGCCCcgcgcUCCC-UGuCGCUGGGg -3'
miRNA:   3'- cUGCCaGUCGGG-----AGGGcGC-GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 34112 0.66 0.534733
Target:  5'- gGGCGGUgggcguacgGGCCCgaCCCGCGCcugcccccCCGGGa -3'
miRNA:   3'- -CUGCCAg--------UCGGGa-GGGCGCGc-------GGCCC- -5'
5230 5' -64.9 NC_001798.1 + 80324 0.66 0.534733
Target:  5'- uGGCGcUCGGCCUUggagcucgggaCCCa-GCGCCGGGa -3'
miRNA:   3'- -CUGCcAGUCGGGA-----------GGGcgCGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 139009 0.66 0.534733
Target:  5'- cGGCGauaUC-GCCCUCCCGgGCGuuCCGGu -3'
miRNA:   3'- -CUGCc--AGuCGGGAGGGCgCGC--GGCCc -5'
5230 5' -64.9 NC_001798.1 + 48836 0.66 0.525516
Target:  5'- cGCGGguccCGGaucccuccccCCCUCuCCGC-CGCCGGGc -3'
miRNA:   3'- cUGCCa---GUC----------GGGAG-GGCGcGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 85236 0.66 0.525516
Target:  5'- cGAC-GUCGcGCCCgccccCCCGCGgcCGCgCGGGg -3'
miRNA:   3'- -CUGcCAGU-CGGGa----GGGCGC--GCG-GCCC- -5'
5230 5' -64.9 NC_001798.1 + 25781 0.66 0.51636
Target:  5'- cGCGGgaccUGGCCUUCgCCG-GCGCCGuGGa -3'
miRNA:   3'- cUGCCa---GUCGGGAG-GGCgCGCGGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 115584 0.66 0.51636
Target:  5'- uGGCGG-CAGCgCCUcgCCCaCG-GCCGGGu -3'
miRNA:   3'- -CUGCCaGUCG-GGA--GGGcGCgCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 153637 0.66 0.51636
Target:  5'- aGGgGGUCGGaggggaggcguaCCUUCCCGCGCGgcgcguCCGcGGg -3'
miRNA:   3'- -CUgCCAGUC------------GGGAGGGCGCGC------GGC-CC- -5'
5230 5' -64.9 NC_001798.1 + 124007 0.66 0.51636
Target:  5'- --gGGUCGcucuGUCC-CCCGgGCaGCCGGGc -3'
miRNA:   3'- cugCCAGU----CGGGaGGGCgCG-CGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 124336 0.66 0.51636
Target:  5'- gGACGGcgCGGaaagcgucaUCCgCCCGaccaGCGCCGGGu -3'
miRNA:   3'- -CUGCCa-GUC---------GGGaGGGCg---CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 2779 0.66 0.51636
Target:  5'- cGGCGGagcUCAGCaggcgcgggCUCCgCGgcaGCGCCGGGc -3'
miRNA:   3'- -CUGCC---AGUCGg--------GAGG-GCg--CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 83745 0.66 0.51636
Target:  5'- aGCGGcccccagaaaCAGCCC-CgCCGCcagcaacagaaGCGCCGGGg -3'
miRNA:   3'- cUGCCa---------GUCGGGaG-GGCG-----------CGCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 54673 0.66 0.513625
Target:  5'- cGCGG-CGcGCCCgCUCGCGgcucagcgcgaggcCGCCGGGg -3'
miRNA:   3'- cUGCCaGU-CGGGaGGGCGC--------------GCGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 23815 0.67 0.507268
Target:  5'- --gGGcCGGCCC-CCCGCcC-CCGGGg -3'
miRNA:   3'- cugCCaGUCGGGaGGGCGcGcGGCCC- -5'
5230 5' -64.9 NC_001798.1 + 25387 0.67 0.507268
Target:  5'- uGGCGccCGGCCCUcauguucgacCCgCGCGCGCUGGc -3'
miRNA:   3'- -CUGCcaGUCGGGA----------GG-GCGCGCGGCCc -5'
5230 5' -64.9 NC_001798.1 + 91778 0.67 0.506363
Target:  5'- gGGCGGcCAcGCCC-CCUGCcgaugacGCGCgGGGc -3'
miRNA:   3'- -CUGCCaGU-CGGGaGGGCG-------CGCGgCCC- -5'
5230 5' -64.9 NC_001798.1 + 98173 0.67 0.498245
Target:  5'- uGACGGuguuuccggaaUCAcGCCCaCCCaGCGCGCCGc- -3'
miRNA:   3'- -CUGCC-----------AGU-CGGGaGGG-CGCGCGGCcc -5'
5230 5' -64.9 NC_001798.1 + 16201 0.67 0.498245
Target:  5'- cACGGgccGCCCUCCgcaCGCGCcGCCuguGGGg -3'
miRNA:   3'- cUGCCaguCGGGAGG---GCGCG-CGG---CCC- -5'
5230 5' -64.9 NC_001798.1 + 150319 0.67 0.489295
Target:  5'- -uCGGUCugAGCCUgggUCauGCGCGaCCGGGg -3'
miRNA:   3'- cuGCCAG--UCGGG---AGggCGCGC-GGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.