miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5231 3' -58.3 NC_001798.1 + 149933 0.66 0.830756
Target:  5'- aGgaGgAGGCGGCGGcGAcCGC-GGCCu -3'
miRNA:   3'- -CgaCgUCUGCCGCCaCU-GCGaUCGGu -5'
5231 3' -58.3 NC_001798.1 + 58647 0.66 0.830756
Target:  5'- aGCUGUccccGGCGGCGGUugucccGAgGCccGCCAc -3'
miRNA:   3'- -CGACGu---CUGCCGCCA------CUgCGauCGGU- -5'
5231 3' -58.3 NC_001798.1 + 28788 0.66 0.830756
Target:  5'- --gGCGG-CGGCGGcGGCGCgcgGGUCc -3'
miRNA:   3'- cgaCGUCuGCCGCCaCUGCGa--UCGGu -5'
5231 3' -58.3 NC_001798.1 + 112497 0.66 0.830756
Target:  5'- gGgaGCaaGGGCuGGCGGUGGCGCgaacgGGaCCc -3'
miRNA:   3'- -CgaCG--UCUG-CCGCCACUGCGa----UC-GGu -5'
5231 3' -58.3 NC_001798.1 + 95449 0.66 0.830756
Target:  5'- aGCUGCAGAUcgaGGacuGGcUGGCGCU-GCUg -3'
miRNA:   3'- -CGACGUCUG---CCg--CC-ACUGCGAuCGGu -5'
5231 3' -58.3 NC_001798.1 + 26368 0.66 0.825764
Target:  5'- aGCUGCGcgggccGCGGCGGgaguucugcgcgcgGGCGCUgcucgAGCCc -3'
miRNA:   3'- -CGACGUc-----UGCCGCCa-------------CUGCGA-----UCGGu -5'
5231 3' -58.3 NC_001798.1 + 104886 0.66 0.822401
Target:  5'- gGC-GCAcucGAaGGCGGaauagUGGCGCUGGCCc -3'
miRNA:   3'- -CGaCGU---CUgCCGCC-----ACUGCGAUCGGu -5'
5231 3' -58.3 NC_001798.1 + 59462 0.66 0.813876
Target:  5'- cGCgUGCccGGGC-GCGGUGAgGCguucGGCCAc -3'
miRNA:   3'- -CG-ACG--UCUGcCGCCACUgCGa---UCGGU- -5'
5231 3' -58.3 NC_001798.1 + 27385 0.66 0.813876
Target:  5'- uCUGCgaGGGCGaGCGGUGguGCGaCUGGCg- -3'
miRNA:   3'- cGACG--UCUGC-CGCCAC--UGC-GAUCGgu -5'
5231 3' -58.3 NC_001798.1 + 105204 0.66 0.80519
Target:  5'- --cGCGGugGGCGacGGCGCU-GCCc -3'
miRNA:   3'- cgaCGUCugCCGCcaCUGCGAuCGGu -5'
5231 3' -58.3 NC_001798.1 + 154154 0.66 0.80519
Target:  5'- --gGCGGGCGGCuGGgcucGGCGUaGGCCc -3'
miRNA:   3'- cgaCGUCUGCCG-CCa---CUGCGaUCGGu -5'
5231 3' -58.3 NC_001798.1 + 23842 0.66 0.79635
Target:  5'- uGCUGU--ACGGCGGgcugGGCGacAGCCGc -3'
miRNA:   3'- -CGACGucUGCCGCCa---CUGCgaUCGGU- -5'
5231 3' -58.3 NC_001798.1 + 149450 0.66 0.79635
Target:  5'- gGgaGCAGgguGCGGCGGcuccACGCgggGGCCGc -3'
miRNA:   3'- -CgaCGUC---UGCCGCCac--UGCGa--UCGGU- -5'
5231 3' -58.3 NC_001798.1 + 36414 0.66 0.79635
Target:  5'- cCUGcCGGGCggGGCGGUGGgGCggGGUCGg -3'
miRNA:   3'- cGAC-GUCUG--CCGCCACUgCGa-UCGGU- -5'
5231 3' -58.3 NC_001798.1 + 2431 0.66 0.787366
Target:  5'- gGCUGgGccccGGCGGCuGGcGGCGCcAGCCGc -3'
miRNA:   3'- -CGACgU----CUGCCG-CCaCUGCGaUCGGU- -5'
5231 3' -58.3 NC_001798.1 + 71606 0.67 0.778246
Target:  5'- cCUGuCGGGCGGCGuccucagccaGACGCUGGCg- -3'
miRNA:   3'- cGAC-GUCUGCCGCca--------CUGCGAUCGgu -5'
5231 3' -58.3 NC_001798.1 + 85660 0.67 0.778246
Target:  5'- uGCUGCuuccggaccGACGGCGGggugcccgGGCGCcacGCCc -3'
miRNA:   3'- -CGACGu--------CUGCCGCCa-------CUGCGau-CGGu -5'
5231 3' -58.3 NC_001798.1 + 87176 0.67 0.778246
Target:  5'- cGCgUGCAGcGCgGGCGacgGGCgGCUGGCCAc -3'
miRNA:   3'- -CG-ACGUC-UG-CCGCca-CUG-CGAUCGGU- -5'
5231 3' -58.3 NC_001798.1 + 93153 0.67 0.778246
Target:  5'- --cGguGAUGGCGGgcGACGCcgcccUGGCCc -3'
miRNA:   3'- cgaCguCUGCCGCCa-CUGCG-----AUCGGu -5'
5231 3' -58.3 NC_001798.1 + 54723 0.67 0.778246
Target:  5'- cGgUGCGGACcuGGgGGccgGACGCggaGGCCGa -3'
miRNA:   3'- -CgACGUCUG--CCgCCa--CUGCGa--UCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.