miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5231 5' -59 NC_001798.1 + 124069 0.66 0.813641
Target:  5'- --cGACCCcccgggaggagGCGGCGCcuGCgCCCCGAc -3'
miRNA:   3'- acaCUGGG-----------UGCUGUGauCGgGGGGCU- -5'
5231 5' -59 NC_001798.1 + 39487 0.66 0.813641
Target:  5'- --cGugCCuCGugGCcgcgGGCCCCCgGAg -3'
miRNA:   3'- acaCugGGuGCugUGa---UCGGGGGgCU- -5'
5231 5' -59 NC_001798.1 + 90302 0.66 0.813641
Target:  5'- uUGUaGGCCgGCaggucACACaUGGCCCCCuCGAc -3'
miRNA:   3'- -ACA-CUGGgUGc----UGUG-AUCGGGGG-GCU- -5'
5231 5' -59 NC_001798.1 + 105207 0.66 0.805054
Target:  5'- gGUGGgCgACGGCGCU-GCCCCguCCGc -3'
miRNA:   3'- aCACUgGgUGCUGUGAuCGGGG--GGCu -5'
5231 5' -59 NC_001798.1 + 129747 0.66 0.805054
Target:  5'- --gGACCC-CGACG-UGGCCCgCCCu- -3'
miRNA:   3'- acaCUGGGuGCUGUgAUCGGG-GGGcu -5'
5231 5' -59 NC_001798.1 + 2444 0.66 0.805054
Target:  5'- --cGGCUgGCGGCGCcAGCCgCCCUGc -3'
miRNA:   3'- acaCUGGgUGCUGUGaUCGG-GGGGCu -5'
5231 5' -59 NC_001798.1 + 24880 0.66 0.796317
Target:  5'- cGUGAgCCugGuCGCcggGGCCCugggCCCGGc -3'
miRNA:   3'- aCACUgGGugCuGUGa--UCGGG----GGGCU- -5'
5231 5' -59 NC_001798.1 + 45557 0.66 0.796317
Target:  5'- --gGACCCACGucaucGCACguccGCCCCCa-- -3'
miRNA:   3'- acaCUGGGUGC-----UGUGau--CGGGGGgcu -5'
5231 5' -59 NC_001798.1 + 78840 0.66 0.796317
Target:  5'- --cGGCCCcuggcGCGGCACgccGGCCgCCUGGg -3'
miRNA:   3'- acaCUGGG-----UGCUGUGa--UCGGgGGGCU- -5'
5231 5' -59 NC_001798.1 + 123996 0.66 0.796317
Target:  5'- aUGaUGACCUggGGuCGCUcuGUCCCCCGGg -3'
miRNA:   3'- -AC-ACUGGGugCU-GUGAu-CGGGGGGCU- -5'
5231 5' -59 NC_001798.1 + 9019 0.66 0.796317
Target:  5'- --cGGCCC-CGAgACccaccGCCCCCCGc -3'
miRNA:   3'- acaCUGGGuGCUgUGau---CGGGGGGCu -5'
5231 5' -59 NC_001798.1 + 31198 0.66 0.796317
Target:  5'- --cGACCCGacCGGCGCccccUGGCgCCCCGc -3'
miRNA:   3'- acaCUGGGU--GCUGUG----AUCGgGGGGCu -5'
5231 5' -59 NC_001798.1 + 124193 0.66 0.796317
Target:  5'- -aUGGCCCAgCGcACcCUGGCCgUCCGGg -3'
miRNA:   3'- acACUGGGU-GC-UGuGAUCGGgGGGCU- -5'
5231 5' -59 NC_001798.1 + 150487 0.66 0.796317
Target:  5'- --cGcCCCgACGACugUGGCagaccucccCCCCCGGg -3'
miRNA:   3'- acaCuGGG-UGCUGugAUCG---------GGGGGCU- -5'
5231 5' -59 NC_001798.1 + 149702 0.66 0.795436
Target:  5'- cGUGGCgcgucuuCCugGcACACUuccucGGCCCCCgCGGc -3'
miRNA:   3'- aCACUG-------GGugC-UGUGA-----UCGGGGG-GCU- -5'
5231 5' -59 NC_001798.1 + 27974 0.66 0.787439
Target:  5'- cGUGccgcGCCC-CGGCGCUccAGCCgugccgcgCCCCGGc -3'
miRNA:   3'- aCAC----UGGGuGCUGUGA--UCGG--------GGGGCU- -5'
5231 5' -59 NC_001798.1 + 31826 0.66 0.787439
Target:  5'- gGUccCCCGCGGCACcaacaCCCCCGGu -3'
miRNA:   3'- aCAcuGGGUGCUGUGaucg-GGGGGCU- -5'
5231 5' -59 NC_001798.1 + 118995 0.66 0.787439
Target:  5'- -cUGGCCCGCGAgAuagucgcgcggCUGGUCgCCCGGg -3'
miRNA:   3'- acACUGGGUGCUgU-----------GAUCGGgGGGCU- -5'
5231 5' -59 NC_001798.1 + 53831 0.66 0.778428
Target:  5'- cGUGugUCGCcGC-CUgGGCCCCgCCGAu -3'
miRNA:   3'- aCACugGGUGcUGuGA-UCGGGG-GGCU- -5'
5231 5' -59 NC_001798.1 + 123444 0.66 0.769292
Target:  5'- ----cCCCcCGACGCgcGCgCCCCCGAc -3'
miRNA:   3'- acacuGGGuGCUGUGauCG-GGGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.