miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5231 5' -59 NC_001798.1 + 2444 0.66 0.805054
Target:  5'- --cGGCUgGCGGCGCcAGCCgCCCUGc -3'
miRNA:   3'- acaCUGGgUGCUGUGaUCGG-GGGGCu -5'
5231 5' -59 NC_001798.1 + 6920 0.67 0.760039
Target:  5'- gGUGugCUagaucgaacgaGCGGCaggaucgcguGCUGGCCCCuuGAu -3'
miRNA:   3'- aCACugGG-----------UGCUG----------UGAUCGGGGggCU- -5'
5231 5' -59 NC_001798.1 + 7615 0.69 0.613031
Target:  5'- cGUGccaACUCGCGGCACcgcgcggaccGGCCCCCgGAg -3'
miRNA:   3'- aCAC---UGGGUGCUGUGa---------UCGGGGGgCU- -5'
5231 5' -59 NC_001798.1 + 9019 0.66 0.796317
Target:  5'- --cGGCCC-CGAgACccaccGCCCCCCGc -3'
miRNA:   3'- acaCUGGGuGCUgUGau---CGGGGGGCu -5'
5231 5' -59 NC_001798.1 + 21317 0.67 0.741217
Target:  5'- --cGGCCCccCGGCcCcccGGCCCCCCGGc -3'
miRNA:   3'- acaCUGGGu-GCUGuGa--UCGGGGGGCU- -5'
5231 5' -59 NC_001798.1 + 23806 0.76 0.261536
Target:  5'- cGUGGCCCGgGGC-C-GGCCCCCCGc -3'
miRNA:   3'- aCACUGGGUgCUGuGaUCGGGGGGCu -5'
5231 5' -59 NC_001798.1 + 24719 0.7 0.583168
Target:  5'- --gGGCCCGCgGGCGC-GGCCgCCCCGc -3'
miRNA:   3'- acaCUGGGUG-CUGUGaUCGG-GGGGCu -5'
5231 5' -59 NC_001798.1 + 24880 0.66 0.796317
Target:  5'- cGUGAgCCugGuCGCcggGGCCCugggCCCGGc -3'
miRNA:   3'- aCACUgGGugCuGUGa--UCGGG----GGGCU- -5'
5231 5' -59 NC_001798.1 + 25088 0.67 0.750678
Target:  5'- --gGGCgCCgccggGCGGCGCcccgcGCCCCCCGAa -3'
miRNA:   3'- acaCUG-GG-----UGCUGUGau---CGGGGGGCU- -5'
5231 5' -59 NC_001798.1 + 25213 0.72 0.468228
Target:  5'- --cGcCCCGCGGCGCUgacccgccGGCCCgCCGAg -3'
miRNA:   3'- acaCuGGGUGCUGUGA--------UCGGGgGGCU- -5'
5231 5' -59 NC_001798.1 + 25407 0.74 0.343015
Target:  5'- --cGACCCGCGcGCGCUGGCCUCgCUGGc -3'
miRNA:   3'- acaCUGGGUGC-UGUGAUCGGGG-GGCU- -5'
5231 5' -59 NC_001798.1 + 25866 0.71 0.524505
Target:  5'- cGUGcGCgCCGCGG-ACUGGCCCgCCGAc -3'
miRNA:   3'- aCAC-UG-GGUGCUgUGAUCGGGgGGCU- -5'
5231 5' -59 NC_001798.1 + 27974 0.66 0.787439
Target:  5'- cGUGccgcGCCC-CGGCGCUccAGCCgugccgcgCCCCGGc -3'
miRNA:   3'- aCAC----UGGGuGCUGUGA--UCGG--------GGGGCU- -5'
5231 5' -59 NC_001798.1 + 29832 0.69 0.623022
Target:  5'- --aGACCCcCGGCACggugagagGGCgaCCCCCGGg -3'
miRNA:   3'- acaCUGGGuGCUGUGa-------UCG--GGGGGCU- -5'
5231 5' -59 NC_001798.1 + 29991 0.67 0.712324
Target:  5'- cGUGGgCCGUG-CGCc-GCCCCCCGAc -3'
miRNA:   3'- aCACUgGGUGCuGUGauCGGGGGGCU- -5'
5231 5' -59 NC_001798.1 + 31109 0.69 0.623022
Target:  5'- aGUGGaCUACGuccCGCccGCCCCCCGAa -3'
miRNA:   3'- aCACUgGGUGCu--GUGauCGGGGGGCU- -5'
5231 5' -59 NC_001798.1 + 31198 0.66 0.796317
Target:  5'- --cGACCCGacCGGCGCccccUGGCgCCCCGc -3'
miRNA:   3'- acaCUGGGU--GCUGUG----AUCGgGGGGCu -5'
5231 5' -59 NC_001798.1 + 31826 0.66 0.787439
Target:  5'- gGUccCCCGCGGCACcaacaCCCCCGGu -3'
miRNA:   3'- aCAcuGGGUGCUGUGaucg-GGGGGCU- -5'
5231 5' -59 NC_001798.1 + 32589 0.68 0.702551
Target:  5'- cGUGGagCCGCcGCACccuGCUCCCCGAg -3'
miRNA:   3'- aCACUg-GGUGcUGUGau-CGGGGGGCU- -5'
5231 5' -59 NC_001798.1 + 34132 0.7 0.543847
Target:  5'- --cGACCCGCG-C-CUGcCCCCCCGGg -3'
miRNA:   3'- acaCUGGGUGCuGuGAUcGGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.