miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 3' -59.5 NC_001798.1 + 29891 0.67 0.667977
Target:  5'- cCACCCGGC--UGCGGguuggggguggucgcGGGCGGUGg- -3'
miRNA:   3'- uGUGGGUCGagACGCU---------------UCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 88086 0.67 0.663936
Target:  5'- gGCGUCUAGCUC-GCgGAGGGCGGCc-- -3'
miRNA:   3'- -UGUGGGUCGAGaCG-CUUCCGCCGcau -5'
5232 3' -59.5 NC_001798.1 + 3196 0.67 0.663936
Target:  5'- gGC-CCCGGC-CggcGCGGAGGCgGGCGc- -3'
miRNA:   3'- -UGuGGGUCGaGa--CGCUUCCG-CCGCau -5'
5232 3' -59.5 NC_001798.1 + 36063 0.67 0.663936
Target:  5'- uGCugCCGGaggCUGCGGGcGCGGgGUAg -3'
miRNA:   3'- -UGugGGUCga-GACGCUUcCGCCgCAU- -5'
5232 3' -59.5 NC_001798.1 + 122821 0.67 0.653818
Target:  5'- gGCGgCCAGggCgGuCGggGGCGGCGg- -3'
miRNA:   3'- -UGUgGGUCgaGaC-GCuuCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 18765 0.67 0.653818
Target:  5'- -aGCCCGGCUCUGUGGAGuuuucugcuuCGGCa-- -3'
miRNA:   3'- ugUGGGUCGAGACGCUUCc---------GCCGcau -5'
5232 3' -59.5 NC_001798.1 + 141550 0.67 0.652805
Target:  5'- uACACCCGgguguucgcguucGCggaggagCUGCGgcGGCGGCa-- -3'
miRNA:   3'- -UGUGGGU-------------CGa------GACGCuuCCGCCGcau -5'
5232 3' -59.5 NC_001798.1 + 121700 0.67 0.643683
Target:  5'- -gGCCgCGGCUCccgccgccGCGAcggAGGCGGCGg- -3'
miRNA:   3'- ugUGG-GUCGAGa-------CGCU---UCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 36522 0.68 0.633538
Target:  5'- gGCGCgCGGCggccggGCGggGGCGcGCGg- -3'
miRNA:   3'- -UGUGgGUCGaga---CGCuuCCGC-CGCau -5'
5232 3' -59.5 NC_001798.1 + 36564 0.68 0.633538
Target:  5'- gGCGCgCGGCggccggGCGggGGCGcGCGg- -3'
miRNA:   3'- -UGUGgGUCGaga---CGCuuCCGC-CGCau -5'
5232 3' -59.5 NC_001798.1 + 36606 0.68 0.633538
Target:  5'- gGCGCgCGGCggccggGCGggGGCGcGCGg- -3'
miRNA:   3'- -UGUGgGUCGaga---CGCuuCCGC-CGCau -5'
5232 3' -59.5 NC_001798.1 + 79188 0.68 0.633538
Target:  5'- uGCGCCCGGC--UGCGGgaugAGGUGGUGc- -3'
miRNA:   3'- -UGUGGGUCGagACGCU----UCCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 24569 0.68 0.633538
Target:  5'- gGCGgCCGGCgc-GCGGAGGCGggccGCGUGg -3'
miRNA:   3'- -UGUgGGUCGagaCGCUUCCGC----CGCAU- -5'
5232 3' -59.5 NC_001798.1 + 106098 0.68 0.627451
Target:  5'- gGCgACCCGGCgccgcgaccgccgggUCUGCGGuuccGGCGGCa-- -3'
miRNA:   3'- -UG-UGGGUCG---------------AGACGCUu---CCGCCGcau -5'
5232 3' -59.5 NC_001798.1 + 111575 0.68 0.623393
Target:  5'- cCACCaCAGCUCccugaGCGggGGgccCGGCGg- -3'
miRNA:   3'- uGUGG-GUCGAGa----CGCuuCC---GCCGCau -5'
5232 3' -59.5 NC_001798.1 + 5370 0.68 0.613254
Target:  5'- gACGCCCGcGCgUCcGCGuccguGGCGGCGg- -3'
miRNA:   3'- -UGUGGGU-CG-AGaCGCuu---CCGCCGCau -5'
5232 3' -59.5 NC_001798.1 + 98597 0.68 0.602118
Target:  5'- gGC-CCCGGCggccccgGCGGccccccgcgccucGGGCGGCGUGg -3'
miRNA:   3'- -UGuGGGUCGaga----CGCU-------------UCCGCCGCAU- -5'
5232 3' -59.5 NC_001798.1 + 92543 0.68 0.593025
Target:  5'- -gACgCGGCUCUGCGAgcGGGCGcGCc-- -3'
miRNA:   3'- ugUGgGUCGAGACGCU--UCCGC-CGcau -5'
5232 3' -59.5 NC_001798.1 + 89671 0.69 0.562909
Target:  5'- uCACCCcGCgCUGCGcGGGCccggaGGCGUAg -3'
miRNA:   3'- uGUGGGuCGaGACGCuUCCG-----CCGCAU- -5'
5232 3' -59.5 NC_001798.1 + 84723 0.69 0.562909
Target:  5'- cGCACgCGGUgucCUGCGuauguGGGGCGGCGg- -3'
miRNA:   3'- -UGUGgGUCGa--GACGC-----UUCCGCCGCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.