miRNA display CGI


Results 21 - 40 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5232 5' -63.1 NC_001798.1 + 39602 0.67 0.566582
Target:  5'- uGGUuguGGGCGUUUCUGgAGAcgcgCCGGCg -3'
miRNA:   3'- -CCAu--CCCGCGGGGGCgUCUa---GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 57172 0.67 0.566582
Target:  5'- cGGgccGGCGCCCuCCGCccAGAUCaCGuGCg -3'
miRNA:   3'- -CCaucCCGCGGG-GGCG--UCUAG-GC-CGa -5'
5232 5' -63.1 NC_001798.1 + 132160 0.67 0.557008
Target:  5'- gGGcGGGGCGCCCCCccCGGAcgcccccCCGGaCg -3'
miRNA:   3'- -CCaUCCCGCGGGGGc-GUCUa------GGCC-Ga -5'
5232 5' -63.1 NC_001798.1 + 29844 0.67 0.557008
Target:  5'- cGGUgagAGGGCGaCCCC-CGGGUCUcaGGCc -3'
miRNA:   3'- -CCA---UCCCGCgGGGGcGUCUAGG--CCGa -5'
5232 5' -63.1 NC_001798.1 + 2096 0.67 0.554145
Target:  5'- cGGggGGGGCccGCCCCCGgcgcggcccgcggcCAGGUccucgcCCGGCa -3'
miRNA:   3'- -CCa-UCCCG--CGGGGGC--------------GUCUA------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 135283 0.67 0.551286
Target:  5'- uGGUGGcGGcCGCCCCCuCGGAgcccugggcccgggCCGuGCUg -3'
miRNA:   3'- -CCAUC-CC-GCGGGGGcGUCUa-------------GGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 35321 0.67 0.547481
Target:  5'- cGGgcacGGCGCCCgcaaCCGCAGAgcacucagCUGGCg -3'
miRNA:   3'- -CCauc-CCGCGGG----GGCGUCUa-------GGCCGa -5'
5232 5' -63.1 NC_001798.1 + 2981 0.67 0.547481
Target:  5'- cGGcGGGGCgGCCggCCCGCGGGcCCcgGGCg -3'
miRNA:   3'- -CCaUCCCG-CGG--GGGCGUCUaGG--CCGa -5'
5232 5' -63.1 NC_001798.1 + 77590 0.67 0.547481
Target:  5'- ---cGGGCGCgCCCUGCAGGagCUgGGCa -3'
miRNA:   3'- ccauCCCGCG-GGGGCGUCUa-GG-CCGa -5'
5232 5' -63.1 NC_001798.1 + 24485 0.67 0.547481
Target:  5'- -cUGGGGCGCCugagcgccgcgCCCGCcuccGcgCCGGCc -3'
miRNA:   3'- ccAUCCCGCGG-----------GGGCGu---CuaGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 23926 0.67 0.538007
Target:  5'- ---cGGGCGCCCCgGCgcccgugugGGcgCCGaGCUg -3'
miRNA:   3'- ccauCCCGCGGGGgCG---------UCuaGGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 48160 0.67 0.538007
Target:  5'- cGGUcGGGCGCCuggcggCCaCGCAcgcCCGGCUg -3'
miRNA:   3'- -CCAuCCCGCGG------GG-GCGUcuaGGCCGA- -5'
5232 5' -63.1 NC_001798.1 + 43083 0.67 0.532349
Target:  5'- cGGgcucGGGCGCCgCCGCcgcguccgcgaccacGGucgcuUCCGGCg -3'
miRNA:   3'- -CCau--CCCGCGGgGGCG---------------UCu----AGGCCGa -5'
5232 5' -63.1 NC_001798.1 + 146721 0.67 0.528589
Target:  5'- cGGUugcGGGCGCCgugCCCGgAGAUCCa--- -3'
miRNA:   3'- -CCAu--CCCGCGG---GGGCgUCUAGGccga -5'
5232 5' -63.1 NC_001798.1 + 23713 0.67 0.528589
Target:  5'- cGGccGGGCgGCCCCgGCGGGU-CGaGCUg -3'
miRNA:   3'- -CCauCCCG-CGGGGgCGUCUAgGC-CGA- -5'
5232 5' -63.1 NC_001798.1 + 150877 0.67 0.528589
Target:  5'- aGGUuccgcGGGuCGCCCCCGCAccgccgcccccGcgCCGGg- -3'
miRNA:   3'- -CCAu----CCC-GCGGGGGCGU-----------CuaGGCCga -5'
5232 5' -63.1 NC_001798.1 + 31275 0.67 0.528589
Target:  5'- gGGUcugGGGGCGgCCCUGCc-GUCgCGGCc -3'
miRNA:   3'- -CCA---UCCCGCgGGGGCGucUAG-GCCGa -5'
5232 5' -63.1 NC_001798.1 + 29515 0.67 0.528589
Target:  5'- aGGgGGGGauucccucccucCGCCCCCGCcggGGcgCgCGGCUa -3'
miRNA:   3'- -CCaUCCC------------GCGGGGGCG---UCuaG-GCCGA- -5'
5232 5' -63.1 NC_001798.1 + 9151 0.67 0.528589
Target:  5'- cGGgcGcGGCGCCgCCCGCgccggggggcaGGGUCUcuGGCg -3'
miRNA:   3'- -CCauC-CCGCGG-GGGCG-----------UCUAGG--CCGa -5'
5232 5' -63.1 NC_001798.1 + 1444 0.67 0.528589
Target:  5'- cGGUgcgAGuGCGCCucgucCUCGCAGAagUCCGGCg -3'
miRNA:   3'- -CCA---UCcCGCGG-----GGGCGUCU--AGGCCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.