miRNA display CGI


Results 1 - 20 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 26490 0.66 0.813194
Target:  5'- uCGGCCGCgggCCGcgcggggacggugcuGGCCGCggCGGgcgGCGGc -3'
miRNA:   3'- -GCUGGCGg--GGU---------------UUGGCGa-GCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 108101 0.66 0.809835
Target:  5'- aCGACCauggGCCCCGGuCUGUgggUGGUGaUGGg -3'
miRNA:   3'- -GCUGG----CGGGGUUuGGCGa--GCCAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 108678 0.66 0.809835
Target:  5'- aCGcGCCGCCCCcgGGGCCGC-Cc--GCGGg -3'
miRNA:   3'- -GC-UGGCGGGG--UUUGGCGaGccaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 116097 0.66 0.809835
Target:  5'- gCGACCuCCCCGAggagugcaugGCCGUguaUCGGgaccugGUGGc -3'
miRNA:   3'- -GCUGGcGGGGUU----------UGGCG---AGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 129035 0.66 0.809835
Target:  5'- gCGAugcuCCGCCCCGGAUCGggCGcugGUGGa -3'
miRNA:   3'- -GCU----GGCGGGGUUUGGCgaGCca-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 145619 0.66 0.809835
Target:  5'- cCGAccCCGCCCCAccgccCCGCcCGGcagGgGGg -3'
miRNA:   3'- -GCU--GGCGGGGUuu---GGCGaGCCa--CgCC- -5'
5233 5' -59.7 NC_001798.1 + 145895 0.66 0.809835
Target:  5'- cCGACCGCCgCCGcgccccACCGg-CGGgaucGCGGc -3'
miRNA:   3'- -GCUGGCGG-GGUu-----UGGCgaGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 5185 0.66 0.801335
Target:  5'- gCGGCCGCgUCGguAGCCGCgcUCcGUGUGGn -3'
miRNA:   3'- -GCUGGCGgGGU--UUGGCG--AGcCACGCC- -5'
5233 5' -59.7 NC_001798.1 + 37382 0.66 0.801335
Target:  5'- uGGCCGCauguccgaCCGAGCCaC-CGG-GCGGg -3'
miRNA:   3'- gCUGGCGg-------GGUUUGGcGaGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 110918 0.66 0.801335
Target:  5'- -aGCCGCCCCc-GCCGgCccgCGGUcaaacGCGGa -3'
miRNA:   3'- gcUGGCGGGGuuUGGC-Ga--GCCA-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 135316 0.66 0.801335
Target:  5'- nGGCCGUgCUGGAgCGCcUGGUGcCGGa -3'
miRNA:   3'- gCUGGCGgGGUUUgGCGaGCCAC-GCC- -5'
5233 5' -59.7 NC_001798.1 + 148016 0.66 0.801335
Target:  5'- gCGcCCGuCCCCuuccucuACCGCgugggcgCGG-GCGGg -3'
miRNA:   3'- -GCuGGC-GGGGuu-----UGGCGa------GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 96970 0.66 0.801335
Target:  5'- -cGCUGgCgCGGACCGCggCGGgcgGCGGg -3'
miRNA:   3'- gcUGGCgGgGUUUGGCGa-GCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 85714 0.66 0.800477
Target:  5'- aGGCCGacgcccuCCCCGGgcGCCGCcaaGGUGCa- -3'
miRNA:   3'- gCUGGC-------GGGGUU--UGGCGag-CCACGcc -5'
5233 5' -59.7 NC_001798.1 + 51430 0.66 0.792694
Target:  5'- uGACgGCCCCGGGgcgcggccuuCCGCgaCGGUcgagauucucGCGGg -3'
miRNA:   3'- gCUGgCGGGGUUU----------GGCGa-GCCA----------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 59737 0.66 0.792694
Target:  5'- gGACaacuucgGCCCCGGGgugccuCCGCUUGGUucccgGCGGu -3'
miRNA:   3'- gCUGg------CGGGGUUU------GGCGAGCCA-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 150560 0.66 0.792694
Target:  5'- aGAgCGgCCCGGGgcCCGCggggCGGcGCGGa -3'
miRNA:   3'- gCUgGCgGGGUUU--GGCGa---GCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 121699 0.66 0.792694
Target:  5'- gGGCCGCggcuCCCGccGCCGCgaCGGagGCGGc -3'
miRNA:   3'- gCUGGCG----GGGUu-UGGCGa-GCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 127252 0.66 0.792694
Target:  5'- -aACCGCCCCcugAAGCaCGacgUCGGgcugGCGGu -3'
miRNA:   3'- gcUGGCGGGG---UUUG-GCg--AGCCa---CGCC- -5'
5233 5' -59.7 NC_001798.1 + 147081 0.66 0.792694
Target:  5'- gCGGCCGCCCCcuccggcGCCGCgCGuucGCGa -3'
miRNA:   3'- -GCUGGCGGGGuu-----UGGCGaGCca-CGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.