miRNA display CGI


Results 41 - 60 of 183 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5233 5' -59.7 NC_001798.1 + 147152 0.67 0.738325
Target:  5'- cCGGCCggggGUCCCGgguAGCCGCcCGGcgccggGCGGa -3'
miRNA:   3'- -GCUGG----CGGGGU---UUGGCGaGCCa-----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 135918 0.67 0.738325
Target:  5'- aCGACCcccuGCCCCAAACgGCcuuccgCGGagGCGc -3'
miRNA:   3'- -GCUGG----CGGGGUUUGgCGa-----GCCa-CGCc -5'
5233 5' -59.7 NC_001798.1 + 106099 0.67 0.738325
Target:  5'- gCGACCcgGCgCCGcGACCGC-CGGgucUGCGGu -3'
miRNA:   3'- -GCUGG--CGgGGU-UUGGCGaGCC---ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 81315 0.67 0.738325
Target:  5'- -cGCUGCCCCcc-CCGCaCGGcagGCGGa -3'
miRNA:   3'- gcUGGCGGGGuuuGGCGaGCCa--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 14750 0.67 0.738325
Target:  5'- -cACC-CCCUAAucCCGCUCGG-GUGGc -3'
miRNA:   3'- gcUGGcGGGGUUu-GGCGAGCCaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 101957 0.67 0.738325
Target:  5'- gGACCGCCCCGGAUagaggagGCccCGGggggGCGa -3'
miRNA:   3'- gCUGGCGGGGUUUGg------CGa-GCCa---CGCc -5'
5233 5' -59.7 NC_001798.1 + 83451 0.67 0.738325
Target:  5'- uCGcACCGCaCCCugcguuCCGUgCGGaUGCGGg -3'
miRNA:   3'- -GC-UGGCG-GGGuuu---GGCGaGCC-ACGCC- -5'
5233 5' -59.7 NC_001798.1 + 154495 0.67 0.747647
Target:  5'- -cGCCGCCCCuccccCCGCgCGccGCGGg -3'
miRNA:   3'- gcUGGCGGGGuuu--GGCGaGCcaCGCC- -5'
5233 5' -59.7 NC_001798.1 + 139593 0.67 0.755038
Target:  5'- cCGACCGgCCU--GCCGCUcCGGgaguuuccguucGCGGc -3'
miRNA:   3'- -GCUGGCgGGGuuUGGCGA-GCCa-----------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 107187 0.67 0.756876
Target:  5'- uGACC-CCCCAGGCCGUgUUGGcguucGUGGc -3'
miRNA:   3'- gCUGGcGGGGUUUGGCG-AGCCa----CGCC- -5'
5233 5' -59.7 NC_001798.1 + 49021 0.67 0.766003
Target:  5'- -aGCCGCCCCu--CCGCUguacgccacCGGU-CGGc -3'
miRNA:   3'- gcUGGCGGGGuuuGGCGA---------GCCAcGCC- -5'
5233 5' -59.7 NC_001798.1 + 140191 0.67 0.766003
Target:  5'- gGGCCGCCU---GCgGC-CGGUGCuGGu -3'
miRNA:   3'- gCUGGCGGGguuUGgCGaGCCACG-CC- -5'
5233 5' -59.7 NC_001798.1 + 85196 0.67 0.766003
Target:  5'- gCGuGCCGCCCgCGAGCgCGCUCGacgaggacGUGGa -3'
miRNA:   3'- -GC-UGGCGGG-GUUUG-GCGAGCca------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 3989 0.67 0.766003
Target:  5'- uCGACCG-CCgGGGCCGCcCGGccgugaaGCGGc -3'
miRNA:   3'- -GCUGGCgGGgUUUGGCGaGCCa------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 142483 0.67 0.766003
Target:  5'- gGACgGCCCCcgAGGCgGCgcgggGGUGCGa -3'
miRNA:   3'- gCUGgCGGGG--UUUGgCGag---CCACGCc -5'
5233 5' -59.7 NC_001798.1 + 154279 0.67 0.762365
Target:  5'- gCGugCGCagCCCGGGCCGUguugCGGgcccucuuaagggGCGGc -3'
miRNA:   3'- -GCugGCG--GGGUUUGGCGa---GCCa------------CGCC- -5'
5233 5' -59.7 NC_001798.1 + 98675 0.67 0.762365
Target:  5'- cCGGCCGCCCCccgucccGAGCCccgcgaccaccaagGCcCGGaaGCGGa -3'
miRNA:   3'- -GCUGGCGGGG-------UUUGG--------------CGaGCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 27475 0.67 0.756876
Target:  5'- --cCCGUCCU--GCCGCgCGGggGCGGg -3'
miRNA:   3'- gcuGGCGGGGuuUGGCGaGCCa-CGCC- -5'
5233 5' -59.7 NC_001798.1 + 102531 0.67 0.756876
Target:  5'- -cACCGUCCCcgcggccggcAGGCCGCacgCGGUcaGCGGc -3'
miRNA:   3'- gcUGGCGGGG----------UUUGGCGa--GCCA--CGCC- -5'
5233 5' -59.7 NC_001798.1 + 23507 0.67 0.756876
Target:  5'- -cGCCGCagaCCAcGCCGCgggcgggacccUCGGcGCGGa -3'
miRNA:   3'- gcUGGCGg--GGUuUGGCG-----------AGCCaCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.